BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0616000 Os04g0616000|AK106295
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56080.1 | chr1:20974457-20976215 REVERSE LENGTH=311 213 1e-55
AT1G16520.1 | chr1:5648904-5650998 FORWARD LENGTH=326 209 2e-54
AT4G15545.1 | chr4:8875932-8877567 FORWARD LENGTH=338 159 2e-39
>AT1G56080.1 | chr1:20974457-20976215 REVERSE LENGTH=311
Length = 310
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 163/316 (51%), Gaps = 36/316 (11%)
Query: 12 DFHLPDEILAVIPTDPYEQLDVARKITSMAIASRVXXXXXXXXXXXXXXXXXXXXXXXXX 71
DF+L DEILAVIPTDPY+QLD+ARKITSMAIASRV
Sbjct: 7 DFNLSDEILAVIPTDPYDQLDLARKITSMAIASRVSNLESQVSGLRQKLLEKDRLVHELE 66
Query: 72 XXXXX-------XXXXXXXXXXENAKLAKERDSLASTAKKMARNLAKLEAFKKQLMKSLS 124
EN KL +ERDSLA TAKK+ R+ AKLEAFK+QLM+SL+
Sbjct: 67 DRVSSFERLYHEADSSLKNVVDENMKLTQERDSLAITAKKLGRDYAKLEAFKRQLMQSLN 126
Query: 125 EDNLLQLSEIGDDRDFDANNNLTARVPSWKXXXXXXXXXXXXXXXXXXXXXXQEHQFS-- 182
+DN Q +E D R VP K QFS
Sbjct: 127 DDNPSQ-TETADVR----------MVPRGKDENSNGSYSNNEGLSEARQRQSMTPQFSPA 175
Query: 183 VTPYTAPKL----------TPGSTPKFLSGPTSPTKSLSEVXXXXXXXXXXXXXXXXAPT 232
TP PK+ + S+PK SG SPT S ++
Sbjct: 176 FTPSGTPKILSTAASPRSYSAASSPKLFSGAASPTSSHYDIRMWSSTSQQSS-----VAN 230
Query: 233 SPPQHRSFAGR-PRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEI 291
SPP+ S + R PRIDGKEFFRQAR+RLSYEQF AFLANIKE NA+KQ RE+TL KAEEI
Sbjct: 231 SPPRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELNARKQGREETLQKAEEI 290
Query: 292 FGTEHKDLYISFQNML 307
FG E+ DLYISF+ +L
Sbjct: 291 FGKENNDLYISFKGLL 306
>AT1G16520.1 | chr1:5648904-5650998 FORWARD LENGTH=326
Length = 325
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 171/319 (53%), Gaps = 20/319 (6%)
Query: 11 VDFHLPDEILAVIPTDPYEQLDVARKITSMAIASRVXXXXXXXXX-------XXXXXXXX 63
+DF LP+E+L+VIP DP+EQLD+ARKITSMAIASRV
Sbjct: 6 LDFELPEEVLSVIPMDPFEQLDLARKITSMAIASRVSNLDSEVVELRQKLLGKESVVREL 65
Query: 64 XXXXXXXXXXXXXXXXXXXXXXXENAKLAKERDSLASTAKKMARNLAKLEAFKKQLMKSL 123
+N L KE+DSLA T K+ R+LAKLE FK+QL+KSL
Sbjct: 66 EEKASRLERDCREADSRLKVVLEDNMNLTKEKDSLAMTVTKLTRDLAKLETFKRQLIKSL 125
Query: 124 SEDNLLQLSEIGDDRDFDANNNLTARVPSWKXXXXXXXXXXXXXXXXXXXXXXQ--EHQF 181
S+++ Q +E D R D + + + ++F
Sbjct: 126 SDESGPQ-TEPVDIRTCDQPGSYPGKDGRINAHSIKQAYSGSTDTNNPVVEASKYTGNKF 184
Query: 182 SVTPYTAPKLTPGSTPKFLS---------GPTSPTKSLSEVXXXXXXXXXXXXXXXXAPT 232
S+T Y +P+LTP +TPK +S SP ++ V A
Sbjct: 185 SMTSYISPRLTPTATPKIISTSVSPRGYSAAGSPKRTSGAVSPTKATLWYPSSQQSSAAN 244
Query: 233 SPPQHRSFAGR-PRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEI 291
SPP++R+ R PR+DGKEFFRQAR+RLSYEQF +FLANIKE NAQKQ+RE+TL KA+EI
Sbjct: 245 SPPRNRTLPARTPRMDGKEFFRQARSRLSYEQFSSFLANIKELNAQKQTREETLRKADEI 304
Query: 292 FGTEHKDLYISFQNMLNRN 310
FG E+KDLY+SFQ +LNRN
Sbjct: 305 FGEENKDLYLSFQGLLNRN 323
>AT4G15545.1 | chr4:8875932-8877567 FORWARD LENGTH=338
Length = 337
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 157/334 (47%), Gaps = 34/334 (10%)
Query: 2 GRHEAAAGVVDFHLPDEILAVIPTDPYEQLDVARKITSMAIASRVXXXXXXXXXXXXXXX 61
G A G F LPDE+L V+P+DP+EQLDVARKITS+A+++RV
Sbjct: 11 GSASAITGSRSFDLPDELLQVLPSDPFEQLDVARKITSIALSTRVSALESESSDLRELLA 70
Query: 62 XXXXXXXXXXXXXXXXXXXXXXX-------XXENAKLAKERDSLASTAKKMARNLAKLEA 114
E L +E SL++T K++ R+++KLE
Sbjct: 71 EKEKEFEELQSHVESLEASLSDAFHKLSLADGEKENLIRENASLSNTVKRLQRDVSKLEG 130
Query: 115 FKKQLMKSLSEDN--------LLQLSEIGDDRDFDANNNLTARVPSWKXXXXXXXXXXXX 166
F+K LM SL +D+ + + + DD F + + + + S +
Sbjct: 131 FRKTLMMSLQDDDQNAGTTQIIAKPTPNDDDTPFQPSRH--SSIQSQQASEAIEPAATDN 188
Query: 167 XXXXXXXXXXQEHQFSVTPYTAPKLTP-GS--------TPKFLSGPTSPTK-SLSEVXXX 216
V+ T P+LTP GS TPK S P SP + S+S
Sbjct: 189 ENDAPKPSLSASLPL-VSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFATTR 247
Query: 217 XXXXXXXXXXXXXAPTSPPQHRSFAGRPRIDGKEFFRQARTRLSYEQFGAFLANIKEFNA 276
P S R R+DGKEFFRQ R+RLSYEQFGAFL N+K+ NA
Sbjct: 248 GMFDDTRSSISISEPGSQ------TARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDLNA 301
Query: 277 QKQSREDTLSKAEEIFGTEHKDLYISFQNMLNRN 310
KQ+RE+TL KAEEIFG +++DLY+ F+ ++ RN
Sbjct: 302 HKQTREETLRKAEEIFGGDNRDLYVIFEGLITRN 335
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,731,254
Number of extensions: 141362
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 7
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)