BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0388400 Os05g0388400|J023098F18
(115 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0388400 ATP-NAD/AcoX kinase family protein 238 5e-64
Os01g0957000 ATP-NAD/AcoX kinase family protein 204 8e-54
Os11g0191400 ATP-NAD/AcoX kinase family protein 110 2e-25
>Os05g0388400 ATP-NAD/AcoX kinase family protein
Length = 115
Score = 238 bits (608), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 VICNFDATFCYHAQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGK 60
VICNFDATFCYHAQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGK
Sbjct: 1 VICNFDATFCYHAQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGK 60
Query: 61 GRKQLGPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPVA 115
GRKQLGPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPVA
Sbjct: 61 GRKQLGPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPVA 115
>Os01g0957000 ATP-NAD/AcoX kinase family protein
Length = 532
Score = 204 bits (520), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/102 (95%), Positives = 97/102 (95%)
Query: 12 HAQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGKGRKQLGPGDAL 71
H QVPGILFTPICPHSLSFRPLILPEYVTLRVQVP NSRGQAWASFDGK RK L PGDAL
Sbjct: 429 HPQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPHNSRGQAWASFDGKDRKLLSPGDAL 488
Query: 72 ICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGP 113
ICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGP
Sbjct: 489 ICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGP 530
>Os11g0191400 ATP-NAD/AcoX kinase family protein
Length = 981
Score = 110 bits (275), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 12 HAQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGKGRKQLGPGDAL 71
H VP +LFTPICPHSLSFRP+ILP+ L +++P ++R AW SFDGK R+QL GD++
Sbjct: 882 HPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSV 941
Query: 72 ICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQ 108
S+S P+PT D T D+ RS+ L+WN R Q
Sbjct: 942 QISMSQHPLPTVNKSDQTGDWFRSLIRCLNWNERLDQ 978
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,634,683
Number of extensions: 199789
Number of successful extensions: 439
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)