Os05g0388400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-NAD/AcoX kinase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0388400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : ATP-NAD/AcoX kinase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.9 | 0.376 | 9.34 | 1.15 | 0.671 | -0.489 | -0.698 | 1.15 | 0.226 | 16.1 | 19.38 | 1646 | -- | -- |
| 65.84 | 0.378 | 9.34 | 1.05 | 0.674 | -0.743 | -0.868 | -- | 0.207 | 16 | 19.19 | 1506 | -- | -- |
| 64.95 | 0.375 | 9.34 | 1.13 | 0.659 | -0.51 | -- | 1.18 | 0.218 | 15.9 | 19.2 | 1563 | -- | -- |
| 66.54 | 0.38 | 9.36 | 1.03 | 0.656 | -0.77 | -- | -- | 0.197 | 15.9 | 19.1 | 1441 | -- | -- |
| 87.36 | 0.435 | 9.33 | 1.07 | -- | -0.569 | -- | 0.678 | 0.216 | -- | 20.2 | 1201 | -- | -- |
| 73.13 | 0.401 | 9.39 | 0.747 | 0.671 | -- | -0.721 | -- | 0.0789 | 16.2 | -- | -- | -- | -- |
| 74.48 | 0.404 | 9.39 | 0.74 | 0.664 | -- | -- | -- | 0.0749 | 15.9 | -- | -- | -- | -- |
| 88.45 | 0.438 | 9.36 | 0.989 | -- | -0.696 | -- | -- | 0.196 | -- | 19.9 | 1156 | -- | -- |
| 87.36 | 0.438 | 9.41 | -- | 0.679 | -0.221 | -- | -- | 0.0166 | 15.8 | 19.1 | 1441 | -- | -- |
| 98.64 | 0.464 | 9.39 | 0.713 | -- | -- | -- | -- | 0.0572 | -- | -- | -- | -- | -- |
| 88.91 | 0.441 | 9.41 | -- | 0.65 | -- | -- | -- | -0.00754 | 15.9 | -- | -- | -- | -- |
| 99.05 | 0.464 | 9.44 | -- | -- | 0.373 | -- | -- | -0.179 | -- | 25.42 | 59 | -- | -- |
| 112.04 | 0.494 | 9.41 | -- | -- | -- | -- | -- | -0.0219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.57 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 9 | 60.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 10 | 60.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 11 | 60.19 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 19 | 60.35 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 23 | 60.45 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 29 | 60.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 30 | 60.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 31 | 60.53 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 54 | 60.82 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 4 |
| 69 | 61.12 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 70 | 61.15 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 71 | 61.15 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 88 | 61.40 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 89 | 61.41 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 108 | 61.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 112 | 61.72 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 134 | 62.03 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 138 | 62.06 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 143 | 62.10 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 170 | 62.21 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 213 | 62.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 12 |
| 216 | 62.47 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 234 | 62.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 245 | 62.65 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 285 | 62.76 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 345 | 62.96 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 352 | 62.98 | wind | 9.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 363 | 63.01 | wind | 9.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 369 | 63.02 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 375 | 63.03 | wind | 9.0 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 389 | 63.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 19 |
| 442 | 63.17 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 449 | 63.18 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 458 | 63.21 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 470 | 63.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 518 | 63.32 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 10 |
| 597 | 63.45 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 13 |
| 598 | 63.46 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 641 | 63.53 | wind | 1.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 664 | 63.56 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 667 | 63.56 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 717 | 63.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 738 | 63.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 758 | 63.67 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 771 | 63.67 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 790 | 63.69 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 810 | 63.71 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 811 | 63.71 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 14 |
| 814 | 63.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 820 | 63.72 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 821 | 63.72 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 863 | 63.76 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 965 | 63.86 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 985 | 63.88 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 989 | 63.88 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 996 | 63.89 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 23 |