BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0386000 Os05g0386000|AK066148
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0386000 Conserved hypothetical protein 686 0.0
Os01g0272600 Conserved hypothetical protein 471 e-133
Os06g0180000 Conserved hypothetical protein 381 e-106
AK108894 119 2e-27
Os01g0904500 Conserved hypothetical protein 66 5e-11
>Os05g0386000 Conserved hypothetical protein
Length = 360
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/360 (93%), Positives = 336/360 (93%)
Query: 1 MSGRKNAGKASPFLLLLISVGCFFATYNFLTMVGHGRSRDAGPRKILXXXXXXXXXXSDP 60
MSGRKNAGKASPFLLLLISVGCFFATYNFLTMVGHGRSRDAGPRKIL SDP
Sbjct: 1 MSGRKNAGKASPFLLLLISVGCFFATYNFLTMVGHGRSRDAGPRKILGGVGGVGGGGSDP 60
Query: 61 SKRFHVALTATDALYSQWQSRVMYYWYREMRDRPGSDMGGFTRILHSGKPDGLMDEIPTL 120
SKRFHVALTATDALYSQWQSRVMYYWYREMRDRPGSDMGGFTRILHSGKPDGLMDEIPTL
Sbjct: 61 SKRFHVALTATDALYSQWQSRVMYYWYREMRDRPGSDMGGFTRILHSGKPDGLMDEIPTL 120
Query: 121 VVDPLPEGADRGYIVLNRPWAFVQWLKKSNIKEDYVLMAEPDHIFVRPLPNLAHGDEPAA 180
VVDPLPEGADRGYIVLNRPWAFVQWLKKSNIKEDYVLMAEPDHIFVRPLPNLAHGDEPAA
Sbjct: 121 VVDPLPEGADRGYIVLNRPWAFVQWLKKSNIKEDYVLMAEPDHIFVRPLPNLAHGDEPAA 180
Query: 181 FPFFYIKPTENEIILRKFFPEENGPVSKIDPIGNSPVIIKKAQLEKIAPTWMNISLKMKE 240
FPFFYIKPTENEIILRKFFPEENGPVSKIDPIGNSPVIIKKAQLEKIAPTWMNISLKMKE
Sbjct: 181 FPFFYIKPTENEIILRKFFPEENGPVSKIDPIGNSPVIIKKAQLEKIAPTWMNISLKMKE 240
Query: 241 DVETDKAFGWVLEMYAYAVASALHGVHYSLRKDFMIQPPWDAKSDNTFIIHYTYGCDYTL 300
DVETDKAFGWVLEMYAYAVASALHGVHYSLRKDFMIQPPWDAKSDNTFIIHYTYGCDYTL
Sbjct: 241 DVETDKAFGWVLEMYAYAVASALHGVHYSLRKDFMIQPPWDAKSDNTFIIHYTYGCDYTL 300
Query: 301 KGELTYGKIGEWRFDKRSYLRSXXXXXXXXXXXXXXESVATLVKMVNEATANIPGWDEER 360
KGELTYGKIGEWRFDKRSYLRS ESVATLVKMVNEATANIPGWDEER
Sbjct: 301 KGELTYGKIGEWRFDKRSYLRSPPPRNLTLPPPGVPESVATLVKMVNEATANIPGWDEER 360
>Os01g0272600 Conserved hypothetical protein
Length = 372
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/298 (75%), Positives = 253/298 (84%), Gaps = 2/298 (0%)
Query: 64 FHVALTATDALYSQWQSRVMYYWYREMRDRP-GSDMGGFTRILHSGKPDGLMDEIPTLVV 122
FHVALTATDA YS+WQ RVMYYWY+ M+ RP G+DMGGFTR+LHSGKPD LM EIPT VV
Sbjct: 76 FHVALTATDAAYSRWQCRVMYYWYKRMQARPEGADMGGFTRVLHSGKPDALMGEIPTFVV 135
Query: 123 DPLPEGADRGYIVLNRPWAFVQWLKKSNIKEDYVLMAEPDHIFVRPLPNLAHGDEPAAFP 182
DPLP G D GY+VLNRPWAFVQWL+K+ I+E+Y+LMAEPDHIFVRPLPNLA D+PAAFP
Sbjct: 136 DPLPAGKDHGYVVLNRPWAFVQWLEKAKIEEEYILMAEPDHIFVRPLPNLAR-DDPAAFP 194
Query: 183 FFYIKPTENEIILRKFFPEENGPVSKIDPIGNSPVIIKKAQLEKIAPTWMNISLKMKEDV 242
FFYI P+E+E +LRK++P+E GPV+ IDPIGNSPVIIKK QLEKIAPTWMN+S++MKED
Sbjct: 195 FFYITPSEHESVLRKYYPKERGPVTNIDPIGNSPVIIKKIQLEKIAPTWMNVSIQMKEDQ 254
Query: 243 ETDKAFGWVLEMYAYAVASALHGVHYSLRKDFMIQPPWDAKSDNTFIIHYTYGCDYTLKG 302
ETDKAFGWVLEMYAYAVASALHGV + LRKDFMIQPP+D K NTFIIH+TYGCDYTLKG
Sbjct: 255 ETDKAFGWVLEMYAYAVASALHGVQHILRKDFMIQPPFDTKLGNTFIIHFTYGCDYTLKG 314
Query: 303 ELTYGKIGEWRFDKRSYLRSXXXXXXXXXXXXXXESVATLVKMVNEATANIPGWDEER 360
LTYGKIGEWRFDKR+Y ESV TLVKMVNEATAN+PGWD+ R
Sbjct: 315 VLTYGKIGEWRFDKRAYQDRPPPRNLTLPPPGVPESVVTLVKMVNEATANLPGWDDGR 372
>Os06g0180000 Conserved hypothetical protein
Length = 283
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/278 (66%), Positives = 215/278 (77%), Gaps = 3/278 (1%)
Query: 83 MYYWYREMRDRPGSDMGG---FTRILHSGKPDGLMDEIPTLVVDPLPEGADRGYIVLNRP 139
MYYW++ R+ G FTRILHSGKPD +DEIPT V DPLP G D+GY+VLNRP
Sbjct: 1 MYYWFKRAREAGGGGGAEMGGFTRILHSGKPDAFVDEIPTFVADPLPAGTDQGYVVLNRP 60
Query: 140 WAFVQWLKKSNIKEDYVLMAEPDHIFVRPLPNLAHGDEPAAFPFFYIKPTENEIILRKFF 199
WAFVQWL+K++I+E+Y+LMAEPDH+ V+P+PNL+ AAFPFFYI+P + E +LRKFF
Sbjct: 61 WAFVQWLQKADIQEEYILMAEPDHLIVKPIPNLSRDGRSAAFPFFYIEPKKYENVLRKFF 120
Query: 200 PEENGPVSKIDPIGNSPVIIKKAQLEKIAPTWMNISLKMKEDVETDKAFGWVLEMYAYAV 259
PE GP++KIDPIGNSPVI +K L +IAPTWMNIS+ MK+D ETDKAFGWVLEMYAYAV
Sbjct: 121 PEHEGPITKIDPIGNSPVIARKESLARIAPTWMNISIAMKKDPETDKAFGWVLEMYAYAV 180
Query: 260 ASALHGVHYSLRKDFMIQPPWDAKSDNTFIIHYTYGCDYTLKGELTYGKIGEWRFDKRSY 319
ASALHGV L K+FMIQPPWD + + FIIHYTYGCDY +KG+LTYGKIGEWRFDKRSY
Sbjct: 181 ASALHGVGNILHKEFMIQPPWDLEIGDAFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSY 240
Query: 320 LRSXXXXXXXXXXXXXXESVATLVKMVNEATANIPGWD 357
+SV TLVKMVNEATANIP WD
Sbjct: 241 DSKPPPRNLPLPPNGVPQSVVTLVKMVNEATANIPNWD 278
>AK108894
Length = 533
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 26/278 (9%)
Query: 60 PSKRFHVALTATDALYSQWQSRVMYYWYREMRDRPGSD-MGGFTRILHSGKPDGLMDEIP 118
P H +T + Y Q R+MY + ++ PG D + FTRI+H D L+ E P
Sbjct: 204 PGSSVHALMTGNGSPYQNIQGRIMYASMKLIQQMPGGDNIKAFTRIMHRTTDDDLVGEFP 263
Query: 119 TLVVDPLPEGADR--GYIVLNRPWAFVQWLKKSN-----IKEDYVLMAEPDHIFVRPL-- 169
T PL D + V +R A VQWL + I+ ++L+ E D++++ PL
Sbjct: 264 TFRAYPLQPECDTWCEFPVKDRANAVVQWLMAAAANPELIQGAWLLLLESDYVWMNPLQL 323
Query: 170 PNLAH--GDEPAAFPFFYIKPT--ENEIILRKFFPEENGPVSKIDPIGNSPVIIKKAQLE 225
P AH F + YI P +++++ PE +S++ G SPV+I+ +L
Sbjct: 324 PGSAHDVAVRGYGFTYDYIDPQYPSAAMVVKRMCPECK--ISEVPHSGPSPVLIRPHELA 381
Query: 226 KIAPTWMNISLKMKEDVETDKAFGWVLEMYAYAVASALHGVHYSL----RKDFMIQPPWD 281
+AP W S ++ + KAFGWV EMYA+ VA +GV + + QPP D
Sbjct: 382 LVAPDWELYSAWIERNELAKKAFGWVREMYAWCVAIQKNGVQLQHEAPPKSKLLSQPPHD 441
Query: 282 AKSDNTFIIHYTYGCDYTLKGELTYGKIGEWRFDKRSY 319
++HYT+G Y G+ WRFDKR +
Sbjct: 442 WVQGEACMLHYTWGTLYNKDGKEF------WRFDKRDW 473
>Os01g0904500 Conserved hypothetical protein
Length = 814
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 63 RFHVALTATDALYSQWQSRVMYYWYREMRDRPGSDMGGFTRILHSGKPD----GLMDEIP 118
+ H + Y WQ+ + + R R +PG+ TR+L D D P
Sbjct: 394 KIHTLFSTECTPYFDWQTVGLMHSLRVSR-QPGN----ITRLLSCSDEDLKNYKGHDLAP 448
Query: 119 TLVVDPLPEGADRG--YIVLNRPWAFVQWLKKSNIKEDYVLMAEPDHIFVRPLPNLAHG- 175
T V + G Y +N+P A + W+ +++++ + D I P+ +G
Sbjct: 449 THYVPSMNRHPLTGDWYPAINKPAAVLHWISHVETDAEFIVILDADMIMRGPITPWEYGA 508
Query: 176 --DEPAAFPFFYIKPTENEIILRKFFPEENGPVSKIDPIGNSPVIIKKAQLEKIAPTWMN 233
P + P+ Y+ +N IL K K+ + +I+ L + A W
Sbjct: 509 KLGHPVSTPYEYLIGCDN--ILAKIHTRNPSACDKVGGV----IIMHIDDLRRFAMLW-- 560
Query: 234 ISLKMKEDVETDKAF------------GWVLEMYAYAVASALHGVHYSLRKDFMIQPPWD 281
L E+V DKA GW+ EMY Y+ A+A G+H+ +R+D +I P +
Sbjct: 561 --LHKTEEVRADKAHYATNITGDIYSSGWISEMYGYSFAAAELGLHHIIRRDILIYPGYV 618
Query: 282 AKSDNTFIIHYTYGCDYTLKGELTYGKIGEWRFDKRSY 319
+ + + + YG L +G +G W FDK +
Sbjct: 619 PVPEVHYKV-FHYG--------LRFG-VGNWSFDKADW 646
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,391,197
Number of extensions: 524791
Number of successful extensions: 838
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 5
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)