Os05g0386000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0386000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.97 | 0.315 | 8.57 | -0.173 | 0.526 | -0.986 | -0.181 | -0.424 | -0.223 | 6.78 | 31.61 | 259 | -- | -- |
| 45.12 | 0.313 | 8.58 | -0.233 | 0.528 | -1 | -0.298 | -- | -0.237 | 6.74 | 31.9 | 263 | -- | -- |
| 45.03 | 0.313 | 8.57 | -0.172 | 0.536 | -1 | -- | -0.493 | -0.221 | 6.92 | 31.78 | 284 | -- | -- |
| 45.25 | 0.313 | 8.58 | -0.244 | 0.54 | -1.01 | -- | -- | -0.228 | 6.97 | 32.16 | 293 | -- | -- |
| 51.62 | 0.335 | 8.58 | -0.17 | -- | -1.04 | -- | -0.727 | -0.226 | -- | 23.73 | 1477 | -- | -- |
| 57.17 | 0.354 | 8.55 | -0.00822 | 0.324 | -- | -0.137 | -- | -0.0704 | 8.82 | -- | -- | -- | -- |
| 57.23 | 0.354 | 8.55 | -0.0123 | 0.323 | -- | -- | -- | -0.0702 | 8.95 | -- | -- | -- | -- |
| 52.03 | 0.336 | 8.6 | -0.274 | -- | -0.923 | -- | -- | -0.263 | -- | 25.11 | 1469 | -- | -- |
| 46.67 | 0.318 | 8.57 | -- | 0.508 | -0.901 | -- | -- | -0.193 | 7.09 | 32.3 | 292 | -- | -- |
| 63.21 | 0.371 | 8.55 | -0.0125 | -- | -- | -- | -- | -0.068 | -- | -- | -- | -- | -- |
| 57.23 | 0.354 | 8.55 | -- | 0.323 | -- | -- | -- | -0.0688 | 8.95 | -- | -- | -- | -- |
| 53.89 | 0.342 | 8.59 | -- | -- | -0.767 | -- | -- | -0.203 | -- | 25.07 | 1469 | -- | -- |
| 63.21 | 0.371 | 8.55 | -- | -- | -- | -- | -- | -0.0666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 2 | 44.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 3 | 44.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 9 | 44.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 38 | 44.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 52 | 44.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 59 | 44.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 76 | 44.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 146 | 44.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 149 | 44.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 175 | 44.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 215 | 44.86 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 264 | 44.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 289 | 44.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 290 | 44.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 332 | 44.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 333 | 45.00 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 366 | 45.04 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 409 | 45.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 430 | 45.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 454 | 45.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 462 | 45.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 561 | 45.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 613 | 45.26 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 615 | 45.26 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 630 | 45.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 648 | 45.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 685 | 45.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 690 | 45.32 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 762 | 45.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |