Os01g0904500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0904500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.26 | 0.279 | 7.26 | -0.819 | 0.547 | -1.61 | -0.258 | 0.0174 | -0.0458 | 21.5 | 23.43 | 1615 | -- | -- |
| 35.26 | 0.277 | 7.26 | -0.816 | 0.548 | -1.62 | -0.26 | -- | -0.0442 | 21.4 | 23.41 | 1607 | -- | -- |
| 35.51 | 0.278 | 7.26 | -0.816 | 0.546 | -1.6 | -- | 0.0257 | -0.0473 | 21.5 | 23.47 | 1614 | -- | -- |
| 35.5 | 0.278 | 7.26 | -0.805 | 0.548 | -1.6 | -- | -- | -0.0452 | 21.5 | 23.46 | 1613 | -- | -- |
| 42.35 | 0.303 | 7.27 | -0.95 | -- | -1.53 | -- | 1.06 | -0.109 | -- | 30.2 | 740 | -- | -- |
| 65.27 | 0.379 | 7.19 | -0.337 | 0.54 | -- | -0.164 | -- | 0.242 | 21.5 | -- | -- | -- | -- |
| 65.37 | 0.379 | 7.19 | -0.331 | 0.54 | -- | -- | -- | 0.242 | 21.6 | -- | -- | -- | -- |
| 43.51 | 0.307 | 7.25 | -0.749 | -- | -1.53 | -- | -- | -0.0659 | -- | 29.5 | 739 | -- | -- |
| 49.59 | 0.328 | 7.23 | -- | 0.55 | -1.14 | -- | -- | 0.102 | 21.3 | 23.9 | 1515 | -- | -- |
| 82.6 | 0.425 | 7.18 | -0.327 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 68.26 | 0.386 | 7.19 | -- | 0.54 | -- | -- | -- | 0.279 | 21.5 | -- | -- | -- | -- |
| 56.63 | 0.351 | 7.22 | -- | -- | -1.24 | -- | -- | 0.0689 | -- | 29.7 | 713 | -- | -- |
| 85.42 | 0.431 | 7.17 | -- | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.96 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 20 | 35.26 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 26 | 35.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 36 | 35.45 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 43 | 35.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 50 | 35.57 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 13 |
| 60 | 35.62 | temperature | 20 | 4320 | < th | dose dependent | sin | 12 | NA |
| 64 | 35.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 110 | 35.75 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 335 | 36.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 362 | 36.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 395 | 36.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 402 | 36.26 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 420 | 36.29 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 454 | 36.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 510 | 36.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 547 | 36.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 622 | 36.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 632 | 36.60 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 692 | 36.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 807 | 36.77 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 834 | 36.79 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 852 | 36.81 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 875 | 36.83 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |