BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0904500 Os01g0904500|AK119437
         (814 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0904500  Conserved hypothetical protein                     1555   0.0  

>Os01g0904500 Conserved hypothetical protein
          Length = 814

 Score = 1555 bits (4025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 770/799 (96%), Positives = 770/799 (96%)

Query: 16  WPSPVSSEAAAGEGRRLHTLFSVECGDYFDWQAVGLLHSLRKAGQPGGVTRLLSCAADQL 75
           WPSPVSSEAAAGEGRRLHTLFSVECGDYFDWQAVGLLHSLRKAGQPGGVTRLLSCAADQL
Sbjct: 16  WPSPVSSEAAAGEGRRLHTLFSVECGDYFDWQAVGLLHSLRKAGQPGGVTRLLSCAADQL 75

Query: 76  PSYRGLRIGHTLQVPSYSRHPRTGDWYPAINKPAGVVHWLKHSVEANNVDWVVILDADQI 135
           PSYRGLRIGHTLQVPSYSRHPRTGDWYPAINKPAGVVHWLKHSVEANNVDWVVILDADQI
Sbjct: 76  PSYRGLRIGHTLQVPSYSRHPRTGDWYPAINKPAGVVHWLKHSVEANNVDWVVILDADQI 135

Query: 136 VRGPIIPWELGAEKGKPVAAYYGYLKGCDNILAQLHTAHPEFCDKVGGILAMHIDDLRAL 195
           VRGPIIPWELGAEKGKPVAAYYGYLKGCDNILAQLHTAHPEFCDKVGGILAMHIDDLRAL
Sbjct: 136 VRGPIIPWELGAEKGKPVAAYYGYLKGCDNILAQLHTAHPEFCDKVGGILAMHIDDLRAL 195

Query: 196 APLWLSKTEEVRQDKSHWSTNITGDIYGMGWISEMYGYSFGAAEVGLRHKINDDIMIYPG 255
           APLWLSKTEEVRQDKSHWSTNITGDIYGMGWISEMYGYSFGAAEVGLRHKINDDIMIYPG
Sbjct: 196 APLWLSKTEEVRQDKSHWSTNITGDIYGMGWISEMYGYSFGAAEVGLRHKINDDIMIYPG 255

Query: 256 YTPRIGIDPLILHYGLPFKVGNWSFSKLEHHEDGIAYDCNRLFPPPPFPREVEMMESDPN 315
           YTPRIGIDPLILHYGLPFKVGNWSFSKLEHHEDGIAYDCNRLFPPPPFPREVEMMESDPN
Sbjct: 256 YTPRIGIDPLILHYGLPFKVGNWSFSKLEHHEDGIAYDCNRLFPPPPFPREVEMMESDPN 315

Query: 316 VKRGLYLSIECINTLNEGLVLHHASVGCPKPQWSKYLSFLKSRRFSELTKPKHWNGQTIE 375
           VKRGLYLSIECINTLNEGLVLHHASVGCPKPQWSKYLSFLKSRRFSELTKPKHWNGQTIE
Sbjct: 316 VKRGLYLSIECINTLNEGLVLHHASVGCPKPQWSKYLSFLKSRRFSELTKPKHWNGQTIE 375

Query: 376 NRNIVQHVASLKEDHKLPKIHTLFSTECTPYFDWQTVGLMHSLRVSRQPGNITRLLSCSD 435
           NRNIVQHVASLKEDHKLPKIHTLFSTECTPYFDWQTVGLMHSLRVSRQPGNITRLLSCSD
Sbjct: 376 NRNIVQHVASLKEDHKLPKIHTLFSTECTPYFDWQTVGLMHSLRVSRQPGNITRLLSCSD 435

Query: 436 EDLKNYKGHDLAPTHYVPSMNRHPLTGDWYPAINKPAAVLHWISHVETDAEFIVILDADM 495
           EDLKNYKGHDLAPTHYVPSMNRHPLTGDWYPAINKPAAVLHWISHVETDAEFIVILDADM
Sbjct: 436 EDLKNYKGHDLAPTHYVPSMNRHPLTGDWYPAINKPAAVLHWISHVETDAEFIVILDADM 495

Query: 496 IMRGPITPWEYGAKLGHPVSTPYEYLIGCDNILAKIHTRNPSACDKVGGVIIMHIDDLRR 555
           IMRGPITPWEYGAKLGHPVSTPYEYLIGCDNILAKIHTRNPSACDKVGGVIIMHIDDLRR
Sbjct: 496 IMRGPITPWEYGAKLGHPVSTPYEYLIGCDNILAKIHTRNPSACDKVGGVIIMHIDDLRR 555

Query: 556 FAMLWLHKTEEVRADKAHYATNITGDIYSSGWISEMYGYSFAAAELGLHHIIRRDILIYP 615
           FAMLWLHKTEEVRADKAHYATNITGDIYSSGWISEMYGYSFAAAELGLHHIIRRDILIYP
Sbjct: 556 FAMLWLHKTEEVRADKAHYATNITGDIYSSGWISEMYGYSFAAAELGLHHIIRRDILIYP 615

Query: 616 GYVPVPEVHYKVFHYGLRFGVGNWSFDKADWRNVDVVNTCWAKFPEPPDPTTVMKEDQAA 675
           GYVPVPEVHYKVFHYGLRFGVGNWSFDKADWRNVDVVNTCWAKFPEPPDPTTVMKEDQAA
Sbjct: 616 GYVPVPEVHYKVFHYGLRFGVGNWSFDKADWRNVDVVNTCWAKFPEPPDPTTVMKEDQAA 675

Query: 676 RERDLLSIACGRALNKALYWHHKSRDCPRPSPVDGASKKFQKVTASNDLGGGNTEQSFIH 735
           RERDLLSIACGRALNKALYWHHKSRDCPRPSPVDGASKKFQKVTASNDLGGGNTEQSFIH
Sbjct: 676 RERDLLSIACGRALNKALYWHHKSRDCPRPSPVDGASKKFQKVTASNDLGGGNTEQSFIH 735

Query: 736 NIKQKSHIDVAKLKPIERVAATISSVHRARRLARXXXXXXXXXXXXXXXXFLLVISMFFT 795
           NIKQKSHIDVAKLKPIERVAATISSVHRARRLAR                FLLVISMFFT
Sbjct: 736 NIKQKSHIDVAKLKPIERVAATISSVHRARRLARSSRIWIIAVWAASVAVFLLVISMFFT 795

Query: 796 DXXXXXXXXXXXXXQKAHV 814
           D             QKAHV
Sbjct: 796 DRRRSVSRSRISRSQKAHV 814



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,628,511
Number of extensions: 1434637
Number of successful extensions: 2688
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2684
Number of HSP's successfully gapped: 2
Length of query: 814
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 705
Effective length of database: 11,344,475
Effective search space: 7997854875
Effective search space used: 7997854875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)