Os06g0180000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0180000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.37 | 0.196 | 9.95 | -0.12 | 0.266 | -0.552 | -0.331 | 0.929 | 0.036 | 18.3 | 26.03 | 281 | -- | -- |
| 17.49 | 0.195 | 9.96 | -0.221 | 0.261 | -0.463 | -0.216 | -- | 0.00993 | 18.7 | 26.3 | 343 | -- | -- |
| 17.6 | 0.195 | 9.95 | -0.13 | 0.272 | -0.56 | -- | 0.783 | 0.0276 | 18.2 | 26.16 | 283 | -- | -- |
| 17.6 | 0.195 | 9.96 | -0.22 | 0.262 | -0.475 | -- | -- | 0.00745 | 18.7 | 26.3 | 343 | -- | -- |
| 19.71 | 0.207 | 9.95 | -0.166 | -- | -0.41 | -- | 0.916 | 0.0129 | -- | 26.77 | 97 | -- | -- |
| 21.33 | 0.217 | 9.96 | -0.297 | 0.0951 | -- | -0.371 | -- | -0.00399 | 19.7 | -- | -- | -- | -- |
| 21.59 | 0.218 | 9.96 | -0.289 | 0.103 | -- | -- | -- | -0.00559 | 21.5 | -- | -- | -- | -- |
| 19.89 | 0.208 | 9.96 | -0.248 | -- | -0.323 | -- | -- | -0.00119 | -- | 26.4 | 94 | -- | -- |
| 18.79 | 0.202 | 9.96 | -- | 0.295 | -0.527 | -- | -- | 0.0389 | 18.5 | 25.95 | 344 | -- | -- |
| 22.21 | 0.22 | 9.96 | -0.288 | -- | -- | -- | -- | -0.00585 | -- | -- | -- | -- | -- |
| 23.8 | 0.228 | 9.96 | -- | 0.102 | -- | -- | -- | 0.0266 | 21.3 | -- | -- | -- | -- |
| 21.32 | 0.215 | 9.95 | -- | -- | -0.283 | -- | -- | 0.0543 | -- | 24.66 | 1667 | -- | -- |
| 24.41 | 0.231 | 9.95 | -- | -- | -- | -- | -- | 0.0262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 2 | 17.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 8 | 17.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 11 | 17.38 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 13 |
| 13 | 17.38 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 26 | 17.43 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 29 | 17.45 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 33 | 17.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 63 | 17.52 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 74 | 17.53 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 76 | 17.53 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 81 | 17.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 111 | 17.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 113 | 17.58 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 133 | 17.60 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 143 | 17.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 155 | 17.64 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 169 | 17.67 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 170 | 17.67 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 191 | 17.67 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 16 |
| 283 | 17.70 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 289 | 17.71 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 294 | 17.72 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 295 | 17.72 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 296 | 17.72 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 298 | 17.72 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 306 | 17.73 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 7 |
| 318 | 17.74 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 328 | 17.75 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 370 | 17.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 377 | 17.78 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 383 | 17.79 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 432 | 17.81 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 458 | 17.84 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 521 | 17.89 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 564 | 17.92 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 606 | 17.94 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 609 | 17.94 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 727 | 18.00 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 739 | 18.01 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |