BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0377000 Os05g0377000|Os05g0377000
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0377000 Similar to Acyl carrier protein (ACP) 240 3e-64
Os03g0352800 Similar to Acyl carrier protein 1 (EC 1.6.5.3)... 133 5e-32
Os07g0222800 Acyl carrier protein-like protein 105 1e-23
>Os05g0377000 Similar to Acyl carrier protein (ACP)
Length = 148
Score = 240 bits (613), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 33 LSSATEEGSKGSFLDKGEVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVM 92
LSSATEEGSKGSFLDKGEVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVM
Sbjct: 33 LSSATEEGSKGSFLDKGEVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVM 92
Query: 93 AFEEEFGFEIPDNEAEKIDSIKTAVDFMMSMDCHFGPSLLLSWSGRGLYILQDAEN 148
AFEEEFGFEIPDNEAEKIDSIKTAVDFMMSMDCHFGPSLLLSWSGRGLYILQDAEN
Sbjct: 93 AFEEEFGFEIPDNEAEKIDSIKTAVDFMMSMDCHFGPSLLLSWSGRGLYILQDAEN 148
>Os03g0352800 Similar to Acyl carrier protein 1 (EC 1.6.5.3) (EC 1.6.99.3)
Length = 135
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
Query: 37 TEEGSKGSFLDKGEVADRIVSVVKNFQKVE-PSKVTPNAHFQKDLGLDSLDTVEIVMAFE 95
+ E +KGSFLDK EV +RIV VV+NFQK++ P+KVTP+AHF+ DLGLDSLD VE+VMA E
Sbjct: 44 SSEEAKGSFLDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALE 103
Query: 96 EEFGFEIPDNEAEKIDSIKTAVDFMMS 122
EEFGFEIPDNEA+KIDSIK AVDF+ S
Sbjct: 104 EEFGFEIPDNEADKIDSIKVAVDFIAS 130
>Os07g0222800 Acyl carrier protein-like protein
Length = 131
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 36 ATEEGSKGSFLDKGEVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFE 95
A S + L + EV DR++ V+K KV+PSKV+P AHF+KDLGLDSLDTVE+VMA E
Sbjct: 40 ARPMSSHDAHLTRDEVVDRLLDVLKCHPKVDPSKVSPEAHFEKDLGLDSLDTVEVVMAIE 99
Query: 96 EEFGFEIPDNEAEKIDSIKTAVDFM 120
EEF EIPD EA+KIDS+ A++++
Sbjct: 100 EEFKLEIPDQEADKIDSLPLAIEYV 124
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,613,604
Number of extensions: 126243
Number of successful extensions: 214
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)