BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0367400 Os05g0367400|AK108439
(267 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0367400 Thiamine pyrophosphokinase family protein 491 e-139
Os01g0931400 Thiamine pyrophosphokinase family protein 391 e-109
Os01g0356500 Thiamine pyrophosphokinase family protein 310 6e-85
>Os05g0367400 Thiamine pyrophosphokinase family protein
Length = 267
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/267 (90%), Positives = 241/267 (90%)
Query: 1 MAPRPAMSHXXXXXXXXXXXXXXXXXXXXXXXXXXVLNQRLPRFAPRLWDRAQVRVCADG 60
MAPRPAMSH VLNQRLPRFAPRLWDRAQVRVCADG
Sbjct: 1 MAPRPAMSHSSAFLLPSPSAAAAGADADGAAYALLVLNQRLPRFAPRLWDRAQVRVCADG 60
Query: 61 GANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLDSVRPEVKEYYSNMGTQIVDESHDQD 120
GANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLDSVRPEVKEYYSNMGTQIVDESHDQD
Sbjct: 61 GANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLDSVRPEVKEYYSNMGTQIVDESHDQD 120
Query: 121 TTDLHKCVAFITENSAIPNKSNLCIFALGALGGRFDHEMGNINVLHLFPNNRIILLSDDC 180
TTDLHKCVAFITENSAIPNKSNLCIFALGALGGRFDHEMGNINVLHLFPNNRIILLSDDC
Sbjct: 121 TTDLHKCVAFITENSAIPNKSNLCIFALGALGGRFDHEMGNINVLHLFPNNRIILLSDDC 180
Query: 181 LIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSATTTTTGLQWNLDNTSMSFGGLISTSN 240
LIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSATTTTTGLQWNLDNTSMSFGGLISTSN
Sbjct: 181 LIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSATTTTTGLQWNLDNTSMSFGGLISTSN 240
Query: 241 IVREESTVVTITSDSDLIWTISLRHHS 267
IVREESTVVTITSDSDLIWTISLRHHS
Sbjct: 241 IVREESTVVTITSDSDLIWTISLRHHS 267
>Os01g0931400 Thiamine pyrophosphokinase family protein
Length = 264
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/230 (80%), Positives = 207/230 (90%), Gaps = 2/230 (0%)
Query: 36 VLNQRLPRFAPRLWDRAQVRVCADGGANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLD 95
VLNQRLPRFAP LWDRA++RVCADGGANRVFDGMPEL P +DPD+VR RYKPDVIKGD+D
Sbjct: 37 VLNQRLPRFAPLLWDRARLRVCADGGANRVFDGMPELLPAEDPDQVRMRYKPDVIKGDMD 96
Query: 96 SVRPEVKEYYSNMGTQIVDESHDQDTTDLHKCVAFITENSAIPNKSNLCIFALGALGGRF 155
S+RPEVKEYYSN+G +IVDESHDQDTTDLHKCV+FIT N +SNL I LGALGGRF
Sbjct: 97 SIRPEVKEYYSNLGAEIVDESHDQDTTDLHKCVSFITRNPPGSEESNLYILVLGALGGRF 156
Query: 156 DHEMGNINVLHLFPNNRIILLSDDCLIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSAT 215
DHEMGNINVL+ F N RI+LLSDDC IFLLP+TH+H IHIERSIEGPHCGLIP+G+PSA+
Sbjct: 157 DHEMGNINVLYRFSNIRIVLLSDDCSIFLLPKTHSHEIHIERSIEGPHCGLIPMGSPSAS 216
Query: 216 TTTTGLQWNLDNTSMSFGGLISTSNIVREESTVVTITSDSDLIWTISLRH 265
TTTTGL+WNLDNTSMS+GGLISTSNIV EE+ V ITSDSDLIWTISLR+
Sbjct: 217 TTTTGLRWNLDNTSMSYGGLISTSNIVEEET--VRITSDSDLIWTISLRN 264
>Os01g0356500 Thiamine pyrophosphokinase family protein
Length = 267
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 140/229 (61%), Positives = 180/229 (78%), Gaps = 2/229 (0%)
Query: 36 VLNQRLPRFAPRLWDRAQVRVCADGGANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLD 95
VLNQ LPRF PRLW A++R+CADGGANR+FD M ++ D + R+RY P++I+GD+D
Sbjct: 38 VLNQNLPRFVPRLWTHAKLRICADGGANRIFDEMFQMTNDPDYESTRKRYIPEIIEGDMD 97
Query: 96 SVRPEVKEYYSNMGTQIVDESHDQDTTDLHKCVAFITENSAIPNKSNLCIFALGALGGRF 155
S+RPEVK++YS+ G++I D+SH+Q+TTDLHKC++ I + K+NLC+ GALGGRF
Sbjct: 98 SIRPEVKQFYSSQGSKISDKSHNQETTDLHKCISRIHRCTPDHEKTNLCVLVTGALGGRF 157
Query: 156 DHEMGNINVLHLFPNNRIILLSDDCLIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSAT 215
DHE NIN+L+LF + RI+LLSDDCLI LLP+TH H I+IE S+EGPHCGL P+GAPS +
Sbjct: 158 DHEAANINILYLFSDMRIVLLSDDCLIRLLPKTHKHEIYIESSVEGPHCGLFPVGAPSGS 217
Query: 216 TTTTGLQWNLDNTSMSFGGLISTSNIVREESTVVTITSDSDLIWTISLR 264
TTTTGL+WNL M FG +ISTSNIV E VT+ SD+DL+WTISLR
Sbjct: 218 TTTTGLKWNLSEAKMRFGSMISTSNIVHAEK--VTVQSDADLLWTISLR 264
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,088,847
Number of extensions: 386136
Number of successful extensions: 722
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)