Os05g0367400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thiamine pyrophosphokinase family protein.
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Os05g0367400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thiamine pyrophosphokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.43 | 0.543 | 8.48 | 0.879 | 1.14 | 0.0198 | 0.792 | -3.68 | 0.765 | 4.14 | 1 | 1381 | -- | -- |
| 142.22 | 0.555 | 8.43 | 1.01 | 1.1 | -0.559 | 0.648 | -- | 0.737 | 4.49 | 9.987 | 1042 | -- | -- |
| 135.14 | 0.541 | 8.48 | 0.871 | 1.15 | 0.0218 | -- | -3.61 | 0.765 | 4.21 | 1 | 1368 | -- | -- |
| 140.78 | 0.553 | 8.44 | 1.04 | 1.44 | -0.717 | -- | -- | 0.751 | 4.25 | 11.68 | 92 | -- | -- |
| 204.01 | 0.665 | 8.49 | 0.975 | -- | -0.122 | -- | -3.56 | 0.791 | -- | 1.1 | 1081 | -- | -- |
| 145.17 | 0.565 | 8.42 | 0.879 | 1.14 | -- | 0.624 | -- | 0.779 | 4.17 | -- | -- | -- | -- |
| 146.24 | 0.566 | 8.43 | 0.873 | 1.14 | -- | -- | -- | 0.776 | 4.25 | -- | -- | -- | -- |
| 186.65 | 0.636 | 8.43 | 0.754 | -- | 0.884 | -- | -- | 0.899 | -- | 3.3 | 56 | -- | -- |
| 165.71 | 0.6 | 8.45 | -- | 1.25 | -0.216 | -- | -- | 0.672 | 4.25 | 14.64 | 92 | -- | -- |
| 216.98 | 0.688 | 8.43 | 0.918 | -- | -- | -- | -- | 0.806 | -- | -- | -- | -- | -- |
| 166.31 | 0.603 | 8.45 | -- | 1.16 | -- | -- | -- | 0.679 | 4.23 | -- | -- | -- | -- |
| 196.46 | 0.653 | 8.44 | -- | -- | 1.12 | -- | -- | 0.753 | -- | 3.094 | 56 | -- | -- |
| 239.23 | 0.722 | 8.46 | -- | -- | -- | -- | -- | 0.704 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.57 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 2 | 124.50 | wind | 7.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 3 | 124.54 | wind | 7.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 4 | 124.55 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 5 | 124.55 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 6 | 124.56 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 9 | 124.90 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 11 | 125.44 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 13 | 125.56 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 21 | 125.95 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 26 | 126.08 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 31 | 126.26 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 35 | 126.31 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 49 | 126.65 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 50 | 126.66 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 54 | 126.72 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 63 | 126.85 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 75 | 126.98 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 76 | 127.00 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 83 | 127.05 | wind | 5.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 87 | 127.08 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 113 | 127.17 | wind | 1.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 116 | 127.19 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 118 | 127.20 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 122 | 127.21 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 152 | 127.34 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 166 | 127.44 | wind | 5.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 168 | 127.45 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 211 | 127.78 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 225 | 127.83 | wind | 1.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 230 | 127.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 233 | 127.87 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 293 | 128.16 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 297 | 128.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 299 | 128.20 | wind | 7.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 307 | 128.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 318 | 128.29 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 321 | 128.30 | wind | 9.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 322 | 128.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 323 | 128.30 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 18 |
| 361 | 128.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 365 | 128.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 386 | 128.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 397 | 128.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 417 | 128.56 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 422 | 128.57 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 475 | 128.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 500 | 128.78 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 503 | 128.78 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 550 | 128.89 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 561 | 128.93 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 612 | 129.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 626 | 129.13 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 16 |
| 627 | 129.14 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 636 | 129.15 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 647 | 129.16 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 648 | 129.16 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 651 | 129.16 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 653 | 129.17 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 711 | 129.27 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 728 | 129.29 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 742 | 129.31 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 12 | 11 |
| 750 | 129.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 767 | 129.34 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 768 | 129.34 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 770 | 129.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 791 | 129.39 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 809 | 129.41 | wind | 5.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 837 | 129.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 841 | 129.45 | wind | 5.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 842 | 129.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 849 | 129.46 | wind | 5.0 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 887 | 129.52 | wind | 5.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 913 | 129.55 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 931 | 129.59 | wind | 9.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 937 | 129.61 | wind | 5.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 962 | 129.64 | wind | 5.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 974 | 129.64 | wind | 5.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 993 | 129.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 7 |