BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0367400 Os05g0367400|AK108439
(267 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02880.3 | chr1:643063-644485 REVERSE LENGTH=268 323 7e-89
AT2G44750.2 | chr2:18451510-18452754 FORWARD LENGTH=268 317 4e-87
>AT1G02880.3 | chr1:643063-644485 REVERSE LENGTH=268
Length = 267
Score = 323 bits (827), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 146/229 (63%), Positives = 185/229 (80%), Gaps = 2/229 (0%)
Query: 36 VLNQRLPRFAPRLWDRAQVRVCADGGANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLD 95
VLNQ LPRF P LW+ A++R+CADGGANR++D +P FP +D +R RYKPDVIKGD+D
Sbjct: 30 VLNQSLPRFTPLLWEHAKLRLCADGGANRIYDELPLFFPNEDALAIRNRYKPDVIKGDMD 89
Query: 96 SVRPEVKEYYSNMGTQIVDESHDQDTTDLHKCVAFITENSAIPNKSNLCIFALGALGGRF 155
S+R +V ++Y N+GT+++DESHDQDTTDL KC+ +I ++ S L I A GALGGRF
Sbjct: 90 SIRRDVLDFYINLGTKVIDESHDQDTTDLDKCILYIRHSTLNQETSGLQILATGALGGRF 149
Query: 156 DHEMGNINVLHLFPNNRIILLSDDCLIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSAT 215
DHE GN+NVL+ +P+ RI+LLSDDCLI LLP+TH H IHI+ S+EGPHCGLIPIG PSA
Sbjct: 150 DHEAGNLNVLYRYPDTRIVLLSDDCLIQLLPKTHRHEIHIQSSLEGPHCGLIPIGTPSAK 209
Query: 216 TTTTGLQWNLDNTSMSFGGLISTSNIVREESTVVTITSDSDLIWTISLR 264
TTT+GLQW+L NT M FGGLISTSN+V+EE +T+ SDSDL+WTIS++
Sbjct: 210 TTTSGLQWDLSNTEMRFGGLISTSNLVKEEK--ITVESDSDLLWTISIK 256
>AT2G44750.2 | chr2:18451510-18452754 FORWARD LENGTH=268
Length = 267
Score = 317 bits (812), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 144/229 (62%), Positives = 185/229 (80%), Gaps = 2/229 (0%)
Query: 36 VLNQRLPRFAPRLWDRAQVRVCADGGANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLD 95
VLNQ LPRF P LW+ A++R+CADGGANR++D +P FP +DP +R RYKPDVIKGD+D
Sbjct: 30 VLNQNLPRFTPLLWEHAKLRLCADGGANRIYDELPLFFPHEDPFVIRNRYKPDVIKGDMD 89
Query: 96 SVRPEVKEYYSNMGTQIVDESHDQDTTDLHKCVAFITENSAIPNKSNLCIFALGALGGRF 155
S+R +V ++Y GT+++DESHDQDTTDL KC+++I ++ S L I A GALGGRF
Sbjct: 90 SIRRDVLDFYVYWGTKVIDESHDQDTTDLDKCISYIRHSTLNQESSRLQILATGALGGRF 149
Query: 156 DHEMGNINVLHLFPNNRIILLSDDCLIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSAT 215
DHE GN+NVL+ +P+ RI+LLSDDCLI LLP+TH H IHI S++GPHCGLIPIG PSA
Sbjct: 150 DHEAGNLNVLYRYPDTRIVLLSDDCLIQLLPKTHRHEIHIHSSLQGPHCGLIPIGTPSAN 209
Query: 216 TTTTGLQWNLDNTSMSFGGLISTSNIVREESTVVTITSDSDLIWTISLR 264
TTT+GL+W+L NT M FGGLISTSN+V+EE ++T+ SDSDL+WTIS++
Sbjct: 210 TTTSGLKWDLSNTEMRFGGLISTSNLVKEE--IITVESDSDLLWTISIK 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,676,513
Number of extensions: 242949
Number of successful extensions: 511
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)