Os01g0931400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thiamine pyrophosphokinase family protein.
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Os01g0931400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thiamine pyrophosphokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.28 | 0.313 | 9.2 | 0.348 | 1.32 | 0.51 | -1.4 | -3.78 | -0.133 | 16.3 | 0.04995 | 777 | -- | -- |
| 52.73 | 0.341 | 9.25 | 0.0771 | 0.911 | -0.323 | 1.1 | -- | -0.239 | 17.4 | 0.04995 | 777 | -- | -- |
| 43.73 | 0.308 | 9.22 | 0.357 | 1.2 | 0.453 | -- | -2.8 | -0.149 | 16.4 | 0.04727 | 952 | -- | -- |
| 51.45 | 0.334 | 9.22 | 0.247 | 1.02 | 0.741 | -- | -- | -0.107 | 16.3 | 0.04967 | 1345 | -- | -- |
| 81.77 | 0.421 | 9.23 | 0.259 | -- | -0.83 | -- | 0.443 | -0.159 | -- | 6.936 | 1977 | -- | -- |
| 54.77 | 0.347 | 9.24 | 0.0935 | 1.02 | -- | 0.475 | -- | -0.212 | 15.8 | -- | -- | -- | -- |
| 55.38 | 0.348 | 9.23 | 0.101 | 1.02 | -- | -- | -- | -0.209 | 15.7 | -- | -- | -- | -- |
| 70.01 | 0.39 | 9.25 | -0.0844 | -- | -1.34 | -- | -- | -0.362 | -- | 4.082 | 1936 | -- | -- |
| 53.36 | 0.34 | 9.22 | -- | 1.04 | 0.521 | -- | -- | -0.116 | 16.1 | 0.06704 | 1348 | -- | -- |
| 112.98 | 0.497 | 9.23 | 0.058 | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
| 55.64 | 0.349 | 9.24 | -- | 1.02 | -- | -- | -- | -0.22 | 15.7 | -- | -- | -- | -- |
| 69.79 | 0.389 | 9.26 | -- | -- | -1.37 | -- | -- | -0.359 | -- | 4.101 | 1946 | -- | -- |
| 113.07 | 0.496 | 9.23 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 3 | 43.75 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 6 | 43.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 8 | 44.01 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 12 |
| 22 | 44.30 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 24 | 44.32 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 14 |
| 43 | 44.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 56 | 44.60 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 17 |
| 71 | 44.69 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 100 | 44.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 108 | 44.84 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 143 | 45.02 | temperature | 25 | 720 | < th | dose independent | sin | 12 | NA |
| 185 | 45.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 192 | 45.25 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 14 |
| 211 | 45.34 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 226 | 45.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 252 | 45.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 256 | 45.50 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 16 |
| 270 | 45.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 322 | 45.71 | humidity | 90 | 720 | < th | dose independent | rect. | 15 | 7 |
| 346 | 45.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 351 | 45.79 | radiation | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 373 | 45.84 | radiation | 10 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 375 | 45.85 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 5 |
| 392 | 45.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 398 | 45.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 403 | 45.89 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 406 | 45.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 416 | 45.92 | radiation | 1 | 720 | < th | dose dependent | sin | 2 | NA |
| 444 | 45.97 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 451 | 45.99 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 22 |
| 463 | 46.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 474 | 46.04 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 21 |
| 486 | 46.06 | humidity | 90 | 720 | < th | dose independent | sin | 19 | NA |
| 513 | 46.09 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 14 |
| 517 | 46.10 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 568 | 46.15 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 576 | 46.16 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 690 | 46.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 693 | 46.32 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 707 | 46.34 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 753 | 46.40 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 808 | 46.42 | radiation | 1 | 720 | < th | dose independent | sin | 2 | NA |
| 809 | 46.42 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 14 |
| 858 | 46.45 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 883 | 46.48 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 10 |
| 901 | 46.50 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 911 | 46.52 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 922 | 46.53 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 934 | 46.55 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 7 |
| 950 | 46.58 | humidity | 90 | 270 | < th | dose independent | rect. | 17 | 9 |
| 951 | 46.58 | radiation | 10 | 720 | < th | dose independent | rect. | 24 | 10 |
| 969 | 46.60 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |