BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0931400 Os01g0931400|AK105048
(264 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02880.3 | chr1:643063-644485 REVERSE LENGTH=268 337 4e-93
AT2G44750.2 | chr2:18451510-18452754 FORWARD LENGTH=268 333 6e-92
>AT1G02880.3 | chr1:643063-644485 REVERSE LENGTH=268
Length = 267
Score = 337 bits (864), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 196/262 (74%), Gaps = 8/262 (3%)
Query: 3 LPTMTHSSSFLRLXXXXXXXXXXXXXXXXXYAVVVLNQRLPRFAPLLWDRARLRVCADGG 62
+ M HSSSFL YA+VVLNQ LPRF PLLW+ A+LR+CADGG
Sbjct: 4 MDVMIHSSSFL--------LPCDETSTGTRYALVVLNQSLPRFTPLLWEHAKLRLCADGG 55
Query: 63 ANRVFDGMPELLPAEDPDQVRMRYKPDVIKGDMDSIRPEVKEYYSNLGAEIVDESHDQDT 122
ANR++D +P P ED +R RYKPDVIKGDMDSIR +V ++Y NLG +++DESHDQDT
Sbjct: 56 ANRIYDELPLFFPNEDALAIRNRYKPDVIKGDMDSIRRDVLDFYINLGTKVIDESHDQDT 115
Query: 123 TDLHKCVSFITRNPPGSEESNLYILVLGALGGRFDHEMGNINVLYRFSNIRIVLLSDDCS 182
TDL KC+ +I + E S L IL GALGGRFDHE GN+NVLYR+ + RIVLLSDDC
Sbjct: 116 TDLDKCILYIRHSTLNQETSGLQILATGALGGRFDHEAGNLNVLYRYPDTRIVLLSDDCL 175
Query: 183 IFLLPKTHSHEIHIERSIEGPHCGLIPMGSPSASTTTTGLRWNLDNTSMSYGGLISTSNI 242
I LLPKTH HEIHI+ S+EGPHCGLIP+G+PSA TTT+GL+W+L NT M +GGLISTSN+
Sbjct: 176 IQLLPKTHRHEIHIQSSLEGPHCGLIPIGTPSAKTTTSGLQWDLSNTEMRFGGLISTSNL 235
Query: 243 VEEETVRITSDSDLIWTISLRN 264
V+EE + + SDSDL+WTIS++
Sbjct: 236 VKEEKITVESDSDLLWTISIKK 257
>AT2G44750.2 | chr2:18451510-18452754 FORWARD LENGTH=268
Length = 267
Score = 333 bits (854), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 159/262 (60%), Positives = 196/262 (74%), Gaps = 9/262 (3%)
Query: 3 LPTMTHSSSFLRLXXXXXXXXXXXXXXXXXYAVVVLNQRLPRFAPLLWDRARLRVCADGG 62
+ M HSSSFL YA+VVLNQ LPRF PLLW+ A+LR+CADGG
Sbjct: 5 MDVMIHSSSFL---------LPCDETCGTRYALVVLNQNLPRFTPLLWEHAKLRLCADGG 55
Query: 63 ANRVFDGMPELLPAEDPDQVRMRYKPDVIKGDMDSIRPEVKEYYSNLGAEIVDESHDQDT 122
ANR++D +P P EDP +R RYKPDVIKGDMDSIR +V ++Y G +++DESHDQDT
Sbjct: 56 ANRIYDELPLFFPHEDPFVIRNRYKPDVIKGDMDSIRRDVLDFYVYWGTKVIDESHDQDT 115
Query: 123 TDLHKCVSFITRNPPGSEESNLYILVLGALGGRFDHEMGNINVLYRFSNIRIVLLSDDCS 182
TDL KC+S+I + E S L IL GALGGRFDHE GN+NVLYR+ + RIVLLSDDC
Sbjct: 116 TDLDKCISYIRHSTLNQESSRLQILATGALGGRFDHEAGNLNVLYRYPDTRIVLLSDDCL 175
Query: 183 IFLLPKTHSHEIHIERSIEGPHCGLIPMGSPSASTTTTGLRWNLDNTSMSYGGLISTSNI 242
I LLPKTH HEIHI S++GPHCGLIP+G+PSA+TTT+GL+W+L NT M +GGLISTSN+
Sbjct: 176 IQLLPKTHRHEIHIHSSLQGPHCGLIPIGTPSANTTTSGLKWDLSNTEMRFGGLISTSNL 235
Query: 243 VEEETVRITSDSDLIWTISLRN 264
V+EE + + SDSDL+WTIS++
Sbjct: 236 VKEEIITVESDSDLLWTISIKK 257
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,902,296
Number of extensions: 257120
Number of successful extensions: 533
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 2
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)