Os01g0356500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thiamine pyrophosphokinase family protein.
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Os01g0356500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thiamine pyrophosphokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.15 | 0.431 | 6.12 | 0.466 | 0.906 | -0.698 | -0.192 | -0.677 | 0.187 | 3.21 | 71.6 | 7890 | -- | -- |
| 84.76 | 0.429 | 6.12 | 0.549 | 0.904 | -0.733 | -0.183 | -- | 0.214 | 3.16 | 72 | 7847 | -- | -- |
| 84.25 | 0.428 | 6.12 | 0.472 | 0.901 | -0.703 | -- | -0.672 | 0.188 | 3.22 | 71.69 | 7861 | -- | -- |
| 84.87 | 0.429 | 6.12 | 0.538 | 0.892 | -0.751 | -- | -- | 0.222 | 3.19 | 72.85 | 7855 | -- | -- |
| 119.59 | 0.512 | 6.16 | 0.707 | -- | -0.465 | -- | -0.14 | 0.0627 | -- | 75.93 | 7617 | -- | -- |
| 94.55 | 0.456 | 6.16 | 0.622 | 0.928 | -- | -0.235 | -- | 0.0324 | 3.5 | -- | -- | -- | -- |
| 94.72 | 0.456 | 6.16 | 0.626 | 0.928 | -- | -- | -- | 0.0337 | 3.52 | -- | -- | -- | -- |
| 119.55 | 0.511 | 6.16 | 0.677 | -- | -0.451 | -- | -- | 0.0556 | -- | 81 | 7627 | -- | -- |
| 92.28 | 0.447 | 6.11 | -- | 0.898 | -0.86 | -- | -- | 0.259 | 3.16 | 74.12 | 7848 | -- | -- |
| 142.81 | 0.558 | 6.16 | 0.665 | -- | -- | -- | -- | 0.0583 | -- | -- | -- | -- | -- |
| 105.05 | 0.479 | 6.18 | -- | 0.94 | -- | -- | -- | -0.036 | 3.52 | -- | -- | -- | -- |
| 130.07 | 0.533 | 6.18 | -- | -- | -0.464 | -- | -- | -0.0096 | -- | 79.36 | 7650 | -- | -- |
| 154.48 | 0.58 | 6.18 | -- | -- | -- | -- | -- | -0.0155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.55 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 3 | 82.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 6 | 82.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 8 | 82.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 14 | 18 |
| 10 | 83.01 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 22 |
| 11 | 83.01 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 22 |
| 12 | 83.02 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 13 | 83.06 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 15 | 83.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 18 | 83.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 22 | 83.06 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 27 | 83.06 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 28 | 83.06 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 29 | 83.06 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 33 | 83.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 36 | 83.07 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 38 | 83.17 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 40 | 83.20 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 41 | 83.20 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 42 | 83.20 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 45 | 83.20 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 47 | 83.20 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 48 | 83.20 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 49 | 83.20 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 53 | 83.22 | wind | 7.0 | 90 | < th | dose independent | rect. | 4 | 2 |
| 54 | 83.22 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 55 | 83.22 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 59 | 83.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 61 | 83.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 2 |
| 62 | 83.24 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 65 | 83.24 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 68 | 83.24 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 2 |
| 71 | 83.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 73 | 83.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 2 |
| 74 | 83.25 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 75 | 83.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 76 | 83.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 77 | 83.32 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 93 | 83.42 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 94 | 83.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 95 | 83.44 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 103 | 83.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 107 | 83.48 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 139 | 83.58 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 147 | 83.59 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 22 |
| 148 | 83.59 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 150 | 83.60 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 154 | 83.60 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 168 | 83.66 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 173 | 83.68 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 201 | 83.75 | temperature | 15.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 202 | 83.75 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 215 | 83.80 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 238 | 83.85 | humidity | 80.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 316 | 83.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 350 | 84.02 | humidity | 80.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 356 | 84.03 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 375 | 84.05 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 378 | 84.06 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 382 | 84.06 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 22 |
| 389 | 84.07 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 405 | 84.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 446 | 84.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 452 | 84.17 | wind | 1.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 453 | 84.17 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 478 | 84.19 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 521 | 84.24 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 537 | 84.26 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 539 | 84.26 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 594 | 84.34 | humidity | 90.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 642 | 84.37 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 684 | 84.41 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 689 | 84.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 703 | 84.44 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 735 | 84.47 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 752 | 84.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 758 | 84.50 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 789 | 84.52 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 823 | 84.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 830 | 84.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 13 |
| 858 | 84.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 865 | 84.59 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 868 | 84.60 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 880 | 84.61 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 23 |
| 885 | 84.61 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 946 | 84.66 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 2 |