BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0356500 Os01g0356500|AK070843
(267 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02880.3 | chr1:643063-644485 REVERSE LENGTH=268 339 8e-94
AT2G44750.2 | chr2:18451510-18452754 FORWARD LENGTH=268 333 6e-92
>AT1G02880.3 | chr1:643063-644485 REVERSE LENGTH=268
Length = 267
Score = 339 bits (870), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 158/259 (61%), Positives = 203/259 (78%), Gaps = 3/259 (1%)
Query: 6 IRSMEVMVHSSTFLLPKLHQPANSPAKKYALVVLNQNLPRFVPRLWTHAKLRICADGGAN 65
+ +M+VM+HSS+FLLP S +YALVVLNQ+LPRF P LW HAKLR+CADGGAN
Sbjct: 1 MSAMDVMIHSSSFLLP---CDETSTGTRYALVVLNQSLPRFTPLLWEHAKLRLCADGGAN 57
Query: 66 RIFDEMFQMTNDPDYESTRKRYIPEIIEGDMDSIRPEVKQFYSSQGSKISDKSHNQETTD 125
RI+DE+ + D + R RY P++I+GDMDSIR +V FY + G+K+ D+SH+Q+TTD
Sbjct: 58 RIYDELPLFFPNEDALAIRNRYKPDVIKGDMDSIRRDVLDFYINLGTKVIDESHDQDTTD 117
Query: 126 LHKCISRIHRCTPDHEKTNLCVLVTGALGGRFDHEAANINILYLFSDMRIVLLSDDCLIR 185
L KCI I T + E + L +L TGALGGRFDHEA N+N+LY + D RIVLLSDDCLI+
Sbjct: 118 LDKCILYIRHSTLNQETSGLQILATGALGGRFDHEAGNLNVLYRYPDTRIVLLSDDCLIQ 177
Query: 186 LLPKTHKHEIYIESSVEGPHCGLFPVGAPSGSTTTTGLKWNLSEAKMRFGSMISTSNIVH 245
LLPKTH+HEI+I+SS+EGPHCGL P+G PS TTT+GL+W+LS +MRFG +ISTSN+V
Sbjct: 178 LLPKTHRHEIHIQSSLEGPHCGLIPIGTPSAKTTTSGLQWDLSNTEMRFGGLISTSNLVK 237
Query: 246 AEKVTVQSDADLLWTISLR 264
EK+TV+SD+DLLWTIS++
Sbjct: 238 EEKITVESDSDLLWTISIK 256
>AT2G44750.2 | chr2:18451510-18452754 FORWARD LENGTH=268
Length = 267
Score = 333 bits (854), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 158/259 (61%), Positives = 200/259 (77%), Gaps = 4/259 (1%)
Query: 6 IRSMEVMVHSSTFLLPKLHQPANSPAKKYALVVLNQNLPRFVPRLWTHAKLRICADGGAN 65
+ +M+VM+HSS+FLLP + +YALVVLNQNLPRF P LW HAKLR+CADGGAN
Sbjct: 2 LSAMDVMIHSSSFLLPC----DETCGTRYALVVLNQNLPRFTPLLWEHAKLRLCADGGAN 57
Query: 66 RIFDEMFQMTNDPDYESTRKRYIPEIIEGDMDSIRPEVKQFYSSQGSKISDKSHNQETTD 125
RI+DE+ D R RY P++I+GDMDSIR +V FY G+K+ D+SH+Q+TTD
Sbjct: 58 RIYDELPLFFPHEDPFVIRNRYKPDVIKGDMDSIRRDVLDFYVYWGTKVIDESHDQDTTD 117
Query: 126 LHKCISRIHRCTPDHEKTNLCVLVTGALGGRFDHEAANINILYLFSDMRIVLLSDDCLIR 185
L KCIS I T + E + L +L TGALGGRFDHEA N+N+LY + D RIVLLSDDCLI+
Sbjct: 118 LDKCISYIRHSTLNQESSRLQILATGALGGRFDHEAGNLNVLYRYPDTRIVLLSDDCLIQ 177
Query: 186 LLPKTHKHEIYIESSVEGPHCGLFPVGAPSGSTTTTGLKWNLSEAKMRFGSMISTSNIVH 245
LLPKTH+HEI+I SS++GPHCGL P+G PS +TTT+GLKW+LS +MRFG +ISTSN+V
Sbjct: 178 LLPKTHRHEIHIHSSLQGPHCGLIPIGTPSANTTTSGLKWDLSNTEMRFGGLISTSNLVK 237
Query: 246 AEKVTVQSDADLLWTISLR 264
E +TV+SD+DLLWTIS++
Sbjct: 238 EEIITVESDSDLLWTISIK 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,956,743
Number of extensions: 253080
Number of successful extensions: 682
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)