BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0326400 Os05g0326400|AK061394
         (149 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0326400  Conserved hypothetical protein                      186   6e-48
Os05g0327000  Cyclin-like domain containing protein               171   2e-43
Os05g0325200  Cyclin-like domain containing protein               170   3e-43
Os07g0231500  Cyclin-like domain containing protein               138   2e-33

>Os05g0326400 Conserved hypothetical protein
          Length = 149

 Score =  186 bits (471), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 100/134 (74%)

Query: 16  VLRDDERGIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGGATPTVRIGEFLE 75
           VLRDDERGIP                                  FRGGATPTVRIGEFLE
Sbjct: 16  VLRDDERGIPRSLSLLAALVEAEALRHAAAAAADADADSDRIRAFRGGATPTVRIGEFLE 75

Query: 76  RIHTFIQRESVRHVIELQGACYVLAGIYLFRFIRSGAAREAGILVDPSIAHRLVAVAIFV 135
           RIHTFIQRESVRHVIELQGACYVLAGIYLFRFIRSGAAREAGILVDPSIAHRLVAVAIFV
Sbjct: 76  RIHTFIQRESVRHVIELQGACYVLAGIYLFRFIRSGAAREAGILVDPSIAHRLVAVAIFV 135

Query: 136 GAKFGGPIDRLPTR 149
           GAKFGGPIDRLPTR
Sbjct: 136 GAKFGGPIDRLPTR 149



>Os05g0327000 Cyclin-like domain containing protein
          Length = 242

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 97/134 (72%), Gaps = 2/134 (1%)

Query: 16  VLRDDERGIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGGATPTVRIGEFLE 75
           VLRDDERGIP                                  FRGGATPTVRIGEFLE
Sbjct: 16  VLRDDERGIPRSLSLLAALVEAEALCHATAADADADSDLIRA--FRGGATPTVRIGEFLE 73

Query: 76  RIHTFIQRESVRHVIELQGACYVLAGIYLFRFIRSGAAREAGILVDPSIAHRLVAVAIFV 135
           RIHTFIQ+ESVRHVIE+QGACYVLAGIYL RFIRSGAAREAGIL+DPS AHRLVAVAIFV
Sbjct: 74  RIHTFIQQESVRHVIEIQGACYVLAGIYLIRFIRSGAAREAGILIDPSTAHRLVAVAIFV 133

Query: 136 GAKFGGPIDRLPTR 149
           GAKFGGPI RLPTR
Sbjct: 134 GAKFGGPIYRLPTR 147



>Os05g0325200 Cyclin-like domain containing protein
          Length = 242

 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 95/134 (70%), Gaps = 2/134 (1%)

Query: 16  VLRDDERGIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGGATPTVRIGEFLE 75
           VLRDDERGIP                                  FRGG TP VRIG FLE
Sbjct: 16  VLRDDERGIPRSLSLLAALVEAEALRHAAAADADADSDLIRA--FRGGTTPIVRIGVFLE 73

Query: 76  RIHTFIQRESVRHVIELQGACYVLAGIYLFRFIRSGAAREAGILVDPSIAHRLVAVAIFV 135
           RIHTFIQRESVRHVIE+Q ACYVLAGIYLFRFIRSGAAREAGILVDPS AHRLVAVAIFV
Sbjct: 74  RIHTFIQRESVRHVIEIQDACYVLAGIYLFRFIRSGAAREAGILVDPSTAHRLVAVAIFV 133

Query: 136 GAKFGGPIDRLPTR 149
           GAKFGGPIDRLPTR
Sbjct: 134 GAKFGGPIDRLPTR 147



>Os07g0231500 Cyclin-like domain containing protein
          Length = 248

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 82/134 (61%), Gaps = 2/134 (1%)

Query: 16  VLRDDERGIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGGATPTVRIGEFLE 75
           VLRDDERGIP                                  FRGGATPTV IGEFLE
Sbjct: 19  VLRDDERGIPRSLSLLAAIVEADAARHAAAATRPAESDLVRA--FRGGATPTVAIGEFLE 76

Query: 76  RIHTFIQRESVRHVIELQGACYVLAGIYLFRFIRSGAAREAGILVDPSIAHRLVAVAIFV 135
           RIH F++ ESVRH I LQ  CYVLAGIYL RF+ S AA EAGI VDPS AHRLVA A+FV
Sbjct: 77  RIHAFVRLESVRHDIRLQATCYVLAGIYLTRFLGSAAAVEAGIRVDPSTAHRLVAAAVFV 136

Query: 136 GAKFGGPIDRLPTR 149
           GAKFG   D LPTR
Sbjct: 137 GAKFGNTSDMLPTR 150



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.148    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,391,691
Number of extensions: 100922
Number of successful extensions: 272
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 4
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)