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Os07g0231500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0257) R2 : 0.453
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.863 (0.063) R2dC : 0.24 R2C : 0.241
β3 : 0.858 (0.0911) R2dE : 0.114 R2E : 0.0792
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.514 (0.0548) R2dN8 : 0.139 R2N8 : 0.0528
σ : 0.48
deviance : 106.37
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_____
C
peak time of C : 14.1
E
wheather : radiation
threshold : 40.07
memory length : 4146
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.89 0.46 11.8 -0.26 0.87 0.727 -0.797 3.07 0.447 13.9 46.32 2839 -- --
105.89 0.479 11.8 0.0651 0.93 0.803 -0.804 -- 0.505 14.1 45.02 3373 -- --
98.3 0.462 11.8 -0.263 0.863 0.724 -- 2.98 0.448 14 46.29 2840 -- --
106.32 0.48 11.8 0.0919 0.879 0.843 -- -- 0.506 14.1 40.08 4149 -- --
142.66 0.556 11.8 -0.372 -- 0.895 -- 3.22 0.438 -- 46.16 2775 -- --
125.24 0.525 11.8 0.0749 0.961 -- -0.617 -- 0.409 13.9 -- -- -- --
126.7 0.527 11.8 0.056 0.962 -- -- -- 0.406 13.9 -- -- -- --
151.54 0.573 11.8 0.0165 -- 1.02 -- -- 0.491 -- 41.33 4116 -- --
106.37 0.48 11.8 -- 0.863 0.858 -- -- 0.514 14.1 40.07 4146 -- --
182.56 0.631 11.9 0.0162 -- -- -- -- 0.384 -- -- -- -- --
126.78 0.527 11.8 -- 0.961 -- -- -- 0.4 13.9 -- -- -- --
151.48 0.573 11.8 -- -- 1.03 -- -- 0.485 -- 41.33 4122 -- --
182.56 0.631 11.9 -- -- -- -- -- 0.382 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.96 temperature 30.0 270 < th dose independent rect. 6 7
2 86.17 temperature 15.0 270 > th dose independent rect. 6 7
4 87.65 precipitation 0.1 270 < th dose independent rect. 2 15
5 87.65 precipitation 0.1 270 < th dose dependent rect. 2 15
6 87.74 wind 7.0 270 < th dose independent rect. 6 7
7 87.78 precipitation 0.1 270 < th dose independent rect. 13 17
8 87.78 precipitation 0.1 270 < th dose dependent rect. 13 17
9 87.94 radiation 10.0 270 < th dose independent rect. 17 9
10 88.08 radiation 20.0 270 < th dose dependent rect. 17 9
11 88.09 radiation 1.0 270 > th dose independent rect. 6 7
14 88.26 humidity 50.0 270 > th dose independent rect. 17 9
18 88.38 temperature 15.0 270 > th dose independent rect. 7 18
19 88.55 precipitation 0.1 270 < th dose independent rect. 6 7
20 88.55 precipitation 0.1 270 < th dose dependent rect. 6 7
22 88.73 atmosphere 995.0 270 > th dose independent rect. 6 7
23 88.73 atmosphere 1015.0 270 < th dose independent rect. 6 7
24 88.73 temperature 10.0 270 > th dose independent rect. 17 9
28 88.73 temperature 10.0 270 > th dose independent rect. 2 15
29 88.73 atmosphere 1015.0 270 < th dose independent rect. 2 15
30 88.73 temperature 10.0 270 > th dose independent rect. 13 17
31 88.77 wind 9.0 270 < th dose independent rect. 17 9
33 88.80 wind 9.0 270 < th dose independent rect. 13 17
47 89.70 precipitation 0.1 270 < th dose independent rect. 1 6
48 89.70 precipitation 0.1 270 < th dose dependent rect. 1 6
49 89.72 radiation 10.0 270 < th dose independent rect. 1 6
50 89.86 wind 9.0 270 < th dose independent rect. 2 15
52 89.92 atmosphere 995.0 270 > th dose independent rect. 17 9
56 90.07 radiation 30.0 270 < th dose dependent rect. 1 6
60 90.14 humidity 70.0 270 > th dose independent rect. 1 6
70 90.25 wind 7.0 270 < th dose independent rect. 1 6
73 90.29 atmosphere 1010.0 270 < th dose independent rect. 1 6
77 90.33 wind 9.0 270 < th dose independent rect. 7 18
84 90.47 radiation 10.0 270 < th dose dependent rect. 1 12
85 90.48 temperature 10.0 270 > th dose independent rect. 1 6
87 90.48 temperature 30.0 270 < th dose independent rect. 1 6
88 90.48 humidity 50.0 270 > th dose independent rect. 1 6
90 90.48 atmosphere 995.0 270 > th dose independent rect. 1 6
95 90.55 wind 9.0 270 < th dose dependent rect. 6 7
102 90.65 precipitation 0.1 270 < th dose independent rect. 17 9
103 90.65 radiation 10.0 270 < th dose dependent rect. 1 9
104 90.65 precipitation 0.1 270 < th dose dependent rect. 17 9
106 90.67 temperature 30.0 270 < th dose independent rect. 7 18
116 90.86 temperature 30.0 270 < th dose independent rect. 17 8
207 91.48 wind 1.0 270 > th dose independent rect. 13 17
210 91.50 wind 9.0 270 < th dose dependent rect. 7 18
224 91.70 humidity 50.0 270 > th dose dependent rect. 17 8
225 91.72 precipitation 0.1 270 < th dose independent rect. 7 18
226 91.72 precipitation 0.1 270 < th dose dependent rect. 7 18
237 91.85 humidity 50.0 90 > th dose dependent rect. 19 8
239 91.87 temperature 10.0 270 > th dose dependent rect. 18 7
251 91.96 atmosphere 995.0 270 > th dose independent rect. 13 17
263 92.00 atmosphere 995.0 270 > th dose independent rect. 2 15
278 92.24 humidity 50.0 270 > th dose independent rect. 6 7
280 92.26 temperature 30.0 270 < th dose independent rect. 19 17
295 92.39 atmosphere 995.0 270 > th dose independent rect. 7 18
332 92.59 humidity 50.0 270 > th dose dependent rect. 1 6
335 92.61 radiation 40.0 90 < th dose independent rect. 15 16
350 92.79 wind 9.0 270 < th dose dependent rect. 1 6
388 93.10 wind 1.0 270 > th dose independent rect. 1 6
394 93.12 wind 9.0 90 < th dose dependent rect. 9 18
405 93.24 temperature 15.0 270 > th dose independent rect. 19 17
408 93.25 wind 1.0 270 > th dose independent rect. 1 17
423 93.40 humidity 50.0 270 > th dose independent rect. 7 18
447 93.46 temperature 15.0 90 > th dose independent rect. 9 18
450 93.47 radiation 40.0 90 < th dose dependent rect. 3 6
460 93.52 radiation 10.0 270 < th dose dependent sin 5 NA
498 93.79 temperature 10.0 270 > th dose dependent rect. 1 6
505 93.87 radiation 40.0 1440 > th dose dependent sin 12 NA
506 93.89 atmosphere 1015.0 270 < th dose independent rect. 7 18
509 93.91 wind 1.0 270 > th dose independent rect. 12 7
515 93.95 radiation 1.0 270 < th dose independent rect. 2 11
540 94.09 radiation 1.0 270 < th dose dependent rect. 5 21
570 94.30 humidity 90.0 90 < th dose independent rect. 7 8
571 94.30 radiation 20.0 10 < th dose independent rect. 4 16
645 94.49 radiation 40.0 90 < th dose dependent rect. 3 16
651 94.52 humidity 70.0 90 > th dose independent rect. 3 6
657 94.57 wind 7.0 90 < th dose independent rect. 9 18
665 94.60 temperature 10.0 270 > th dose dependent rect. 2 4
672 94.66 humidity 50.0 90 > th dose dependent rect. 3 6
683 94.74 wind 1.0 43200 > th dose dependent rect. 3 3
685 94.76 wind 1.0 270 > th dose independent rect. 6 7
698 94.85 atmosphere 1015.0 270 < th dose independent rect. 18 7
708 94.89 wind 9.0 43200 < th dose dependent rect. 3 3
726 94.94 radiation 40.0 1440 > th dose dependent rect. 14 20
731 94.97 radiation 40.0 1440 < th dose independent sin 13 NA
785 95.07 radiation 30.0 10 < th dose dependent rect. 4 16
791 95.08 wind 1.0 270 > th dose independent rect. 18 7
796 95.09 wind 5.0 43200 < th dose dependent rect. 1 4
810 95.17 radiation 40.0 1440 < th dose independent rect. 13 20
830 95.24 wind 9.0 270 < th dose dependent rect. 17 8
861 95.29 wind 7.0 270 < th dose independent rect. 19 17
874 95.32 radiation 1.0 270 > th dose independent sin 4 NA
893 95.38 wind 9.0 90 < th dose dependent rect. 3 6
911 95.42 atmosphere 1015.0 270 < th dose independent rect. 13 17
918 95.44 wind 3.0 43200 > th dose independent rect. 3 3
924 95.47 wind 3.0 43200 < th dose independent rect. 3 2
986 95.63 radiation 40.0 1440 > th dose independent rect. 14 20