BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0325400 Os05g0325400|AK100476
(72 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0325400 Conserved hypothetical protein 151 1e-37
Os05g0326900 116 4e-27
Os08g0330900 Cyclin-like F-box domain containing protein 114 2e-26
Os01g0352000 107 3e-24
Os05g0311201 106 3e-24
Os09g0536600 105 8e-24
Os07g0663200 Conserved hypothetical protein 104 1e-23
Os12g0567900 103 2e-23
Os02g0639850 102 9e-23
Os12g0587100 99 8e-22
Os11g0573700 RNA-directed DNA polymerase (Reverse transcrip... 96 4e-21
Os02g0118800 Conserved hypothetical protein 93 3e-20
Os07g0649700 Zinc finger, CCHC-type domain containing protein 90 4e-19
Os01g0149300 87 2e-18
Os03g0206250 87 3e-18
Os03g0842400 Conserved hypothetical protein 85 1e-17
Os02g0552500 84 3e-17
Os06g0680100 82 1e-16
Os01g0891600 74 3e-14
Os01g0516800 ABC transporter related domain containing protein 65 1e-11
Os11g0517200 Conserved hypothetical protein 63 5e-11
Os06g0291700 62 9e-11
>Os05g0325400 Conserved hypothetical protein
Length = 72
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP
Sbjct: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
Query: 61 IPGDEDQPLTDR 72
IPGDEDQPLTDR
Sbjct: 61 IPGDEDQPLTDR 72
>Os05g0326900
Length = 355
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 62/71 (87%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
+ALKGRCLTADNLAKRNWPHD +CPLCQR++EDCHHLFV+C++T AVWR MR+W N +F
Sbjct: 189 IALKGRCLTADNLAKRNWPHDVLCPLCQREDEDCHHLFVSCDYTAAVWRKMRAWCNANFT 248
Query: 61 IPGDEDQPLTD 71
IP D+++ L +
Sbjct: 249 IPADKNRSLAE 259
>Os08g0330900 Cyclin-like F-box domain containing protein
Length = 733
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 59/71 (83%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
+ALKGRCLTADNLAKRNWPHD +C LCQR+NEDCHHL V+C++T AVWR +R W N++
Sbjct: 529 IALKGRCLTADNLAKRNWPHDAICSLCQRENEDCHHLLVSCDYTAAVWRKLRRWCNINIA 588
Query: 61 IPGDEDQPLTD 71
IP ++ +PL D
Sbjct: 589 IPAEDGRPLAD 599
>Os01g0352000
Length = 305
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 57/71 (80%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
+ LK +CLTADNLAKRNWPHD++CPL QR +EDCHHLFV C++ +AVWR++R W + F
Sbjct: 166 ITLKNQCLTADNLAKRNWPHDDLCPLYQRQDEDCHHLFVGCDYMVAVWRIIRRWCSASFA 225
Query: 61 IPGDEDQPLTD 71
IP DE+ L+D
Sbjct: 226 IPADEENTLSD 236
>Os05g0311201
Length = 168
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LALK RCLTADNLAKRNWPHD++C LCQRD+E+CHHLFVAC++T AVWR ++ W N FP
Sbjct: 30 LALKDRCLTADNLAKRNWPHDDLCSLCQRDDENCHHLFVACDYT-AVWRSIKRWCNESFP 88
Query: 61 IPGDEDQPLTD 71
IP D D L D
Sbjct: 89 IPADGDAALAD 99
>Os09g0536600
Length = 581
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 57/71 (80%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LALKG+CLTADNLAKRNWPH+++C LC++++ED HHL V C FT VWR +R W+ VDFP
Sbjct: 442 LALKGKCLTADNLAKRNWPHEDLCQLCRQNSEDGHHLLVDCAFTTEVWRRIRGWLGVDFP 501
Query: 61 IPGDEDQPLTD 71
+P + PL+D
Sbjct: 502 LPAEMATPLSD 512
>Os07g0663200 Conserved hypothetical protein
Length = 232
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 54/71 (76%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA +GRC TADNLAK+ WPH++ C LC R+ EDCHHLFV C F+ VW LMR+WI+VDFP
Sbjct: 92 LAARGRCQTADNLAKKGWPHEDSCALCMREQEDCHHLFVTCEFSGRVWELMRAWISVDFP 151
Query: 61 IPGDEDQPLTD 71
IPG D L D
Sbjct: 152 IPGQIDCSLID 162
>Os12g0567900
Length = 341
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA KG+CLTADNLAKR WPH++ C LCQR+ EDC HLF+ C+F+ VW+L+R+W+NVDFP
Sbjct: 204 LATKGKCLTADNLAKRGWPHEDHCVLCQREQEDCLHLFITCDFSRRVWQLLRAWVNVDFP 263
Query: 61 IPGDEDQPL 69
+PG + L
Sbjct: 264 LPGQAGEGL 272
>Os02g0639850
Length = 410
Score = 102 bits (253), Expect = 9e-23, Method: Composition-based stats.
Identities = 44/71 (61%), Positives = 53/71 (74%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA KGRCLTADNL KR WPH + C LC R++EDC HLF C +T+ VW L+R+WINV FP
Sbjct: 271 LATKGRCLTADNLQKRGWPHSDCCTLCTRESEDCAHLFSKCVYTVRVWSLLRNWINVPFP 330
Query: 61 IPGDEDQPLTD 71
IPG + LT+
Sbjct: 331 IPGRSELGLTE 341
>Os12g0587100
Length = 1618
Score = 99.0 bits (245), Expect = 8e-22, Method: Composition-based stats.
Identities = 41/71 (57%), Positives = 50/71 (70%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA+KGRCLTADNL+KR WPHD C LCQ EDC+HL V C FT VW+ +++W+NV FP
Sbjct: 570 LAVKGRCLTADNLSKRGWPHDPTCLLCQSAPEDCNHLLVKCPFTNRVWQQLKAWVNVTFP 629
Query: 61 IPGDEDQPLTD 71
+P L D
Sbjct: 630 LPAQLGMELAD 640
>Os11g0573700 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 700
Score = 96.3 bits (238), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 50/71 (70%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA KGRCLTADNL KR W H++ C LCQ + EDC HLFV C FT VWR+M+ WI ++F
Sbjct: 558 LAAKGRCLTADNLGKRGWQHEDCCSLCQSEAEDCLHLFVTCAFTRRVWRMMQGWIGINFL 617
Query: 61 IPGDEDQPLTD 71
+P + + L D
Sbjct: 618 LPTENEPALAD 628
>Os02g0118800 Conserved hypothetical protein
Length = 212
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 50/71 (70%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA KGRCLTADNL KR W H++ C LCQ + EDC HLFV C FT VWR+M+ WI ++F
Sbjct: 70 LAAKGRCLTADNLGKRGWQHEDCCSLCQSEAEDCLHLFVTCAFTRRVWRMMQGWIGINFL 129
Query: 61 IPGDEDQPLTD 71
+P + + L D
Sbjct: 130 LPTENEPALAD 140
>Os07g0649700 Zinc finger, CCHC-type domain containing protein
Length = 1509
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
L KGRCLTADNL KR WPH++ C LC D E C HL + C FT +W L+R+W+ FP
Sbjct: 1444 LITKGRCLTADNLQKRGWPHEDGCVLCNGDQESCDHLLLGCPFTNRIWGLLRTWLGTPFP 1503
Query: 61 IPGDED 66
+PGD+D
Sbjct: 1504 LPGDDD 1509
>Os01g0149300
Length = 406
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 43/47 (91%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAV 47
+ALKGRCLTADNLAKRNWPHD +C LCQR+NEDCHHL V+C++T A+
Sbjct: 351 IALKGRCLTADNLAKRNWPHDAICSLCQRENEDCHHLLVSCDYTAAL 397
>Os03g0206250
Length = 110
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 4 KGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFPIPG 63
KGRCLTADNL+KR WPH +VC LC +ED HLFV+C +T VWR+++ WI V F +P
Sbjct: 15 KGRCLTADNLSKRGWPHQQVCQLCLVGDEDFEHLFVSCTYTTRVWRMIKGWIGVGFLLPS 74
Query: 64 DEDQPLTD 71
+ L +
Sbjct: 75 ESGLDLGE 82
>Os03g0842400 Conserved hypothetical protein
Length = 116
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA KGRCLTADNL KR W HD+ C LCQR+ E C HLF+ C+ + VW LM+ WI + F
Sbjct: 5 LAAKGRCLTADNLEKRGWLHDDSCHLCQREEESCLHLFLTCDLSRRVWTLMQRWIGIGFA 64
Query: 61 IPGDEDQPLTD 71
P D LT+
Sbjct: 65 PPTINDTSLTE 75
>Os02g0552500
Length = 433
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA KGRCLTADNL+KR WPH + LC +EDC HLFV+C +T VWR+++ W +
Sbjct: 255 LAEKGRCLTADNLSKRGWPHHQTFSLCTSSDEDCEHLFVSCPYTTRVWRMIKGWAGIGIQ 314
Query: 61 IPGD 64
+P +
Sbjct: 315 LPAE 318
>Os06g0680100
Length = 273
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
L KGRCL ADNL KR W H++ C LC D E C HL + C F+ VW L+R+WI FP
Sbjct: 135 LITKGRCLIADNLQKRGWLHEDGCVLCNGDQESCDHLLLQCPFSNRVWGLVRTWIGTSFP 194
Query: 61 IPGDEDQPLTD 71
+PG+++ D
Sbjct: 195 LPGEDNWEFAD 205
>Os01g0891600
Length = 265
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRS 53
LA KGRCLTADNL KR WPH + C LC R EDC HLF C++T+ W + S
Sbjct: 189 LAAKGRCLTADNLQKRGWPHSDCCNLCSRKPEDCTHLFTKCDYTVRDWMISAS 241
>Os01g0516800 ABC transporter related domain containing protein
Length = 2761
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWINVDFP 60
LA++G CLT DNL +R W +C LC D E C H+F C FT VW +RS +++
Sbjct: 94 LAMRGACLTTDNLQRRGWQMASICHLCLADGESCSHIFHDCPFTQQVWTRIRSRLDLPCS 153
Query: 61 IPGD 64
P +
Sbjct: 154 TPSE 157
>Os11g0517200 Conserved hypothetical protein
Length = 483
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 3 LKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMR 52
+K CLTADNL +R W +C LC E CHH+F +C+FT VW L+R
Sbjct: 36 MKSACLTADNLQRRGWHLAPICHLCSNGGESCHHIFSSCSFTQEVWGLVR 85
>Os06g0291700
Length = 696
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 1 LALKGRCLTADNLAKRNWPHDEVCPLCQRDNEDCHHLFVACNFTIAVWRLMRSWI 55
L ++ R T+D LA R WP+ VCPLC+ NE HL +C +T +WRL +W+
Sbjct: 552 LVIQNRVWTSDRLATRGWPNSGVCPLCRMTNETVCHLLASCRYTRRIWRLTANWV 606
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.510
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,012,511
Number of extensions: 105665
Number of successful extensions: 455
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 22
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)