Os05g0325400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0325400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.41 | 0.518 | 5.28 | -4.3 | 0.696 | 2.91 | -1.18 | -3.85 | -0.202 | 14 | 8.819 | 1009 | -- | -- |
| 132.4 | 0.536 | 5.19 | -3.56 | 0.695 | 2.79 | -0.758 | -- | -0.00543 | 14.8 | 10.57 | 1128 | -- | -- |
| 126.01 | 0.523 | 5.27 | -4.3 | 0.713 | 3.04 | -- | -3.52 | -0.198 | 13.2 | 5.625 | 929 | -- | -- |
| 134.16 | 0.539 | 5.19 | -3.58 | 0.701 | 2.86 | -- | -- | -0.0108 | 14.1 | 10.02 | 1064 | -- | -- |
| 141.41 | 0.554 | 5.26 | -4.07 | -- | 2.74 | -- | -5.12 | -0.107 | -- | 14.06 | 267 | -- | -- |
| 254.44 | 0.748 | 5.08 | -2.74 | 0.416 | -- | -1.08 | -- | 0.479 | 16.5 | -- | -- | -- | -- |
| 257.56 | 0.752 | 5.09 | -2.75 | 0.41 | -- | -- | -- | 0.473 | 16.5 | -- | -- | -- | -- |
| 144.97 | 0.561 | 5.2 | -3.63 | -- | 2.7 | -- | -- | -0.0353 | -- | 7.976 | 1698 | -- | -- |
| 428.03 | 0.964 | 5.04 | -- | 0.486 | 1.39 | -- | -- | 0.609 | 13.9 | 11.15 | 852 | -- | -- |
| 266.52 | 0.763 | 5.08 | -2.77 | -- | -- | -- | -- | 0.462 | -- | -- | -- | -- | -- |
| 457.21 | 1 | 5.02 | -- | 0.461 | -- | -- | -- | 0.779 | 16.4 | -- | -- | -- | -- |
| 430.33 | 0.966 | 5.05 | -- | -- | 1.26 | -- | -- | 0.597 | -- | 19.3 | 156 | -- | -- |
| 468.65 | 1.01 | 5.01 | -- | -- | -- | -- | -- | 0.769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 4 | 120.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 57 | 120.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 59 | 120.94 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 163 | 122.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 173 | 122.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 213 | 122.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 220 | 122.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 355 | 123.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 371 | 123.40 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 407 | 123.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 416 | 123.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 417 | 123.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 420 | 123.75 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 425 | 123.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 437 | 123.86 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 548 | 124.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 600 | 124.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 725 | 125.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 803 | 125.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 852 | 126.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 969 | 126.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 9 |