BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0285900 Os05g0285900|AK061533
         (116 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0285900  Conserved hypothetical protein                      137   1e-33
Os01g0729900  Conserved hypothetical protein                       94   2e-20
Os02g0510400  Hypothetical protein                                 72   1e-13

>Os05g0285900 Conserved hypothetical protein
          Length = 116

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 73/85 (85%)

Query: 32  CLLRIPPLRVRIERRLAQGFTGLLXXXXXXXXXXXXSHKRIPFEIDLPVVPFGASRGARA 91
           CLLRIPPLRVRIERRLAQGFTGLL            SHKRIPFEIDLPVVPFGASRGARA
Sbjct: 32  CLLRIPPLRVRIERRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARA 91

Query: 92  GKEFFLAAAVASIIDIGRRPPAPGR 116
           GKEFFLAAAVASIIDIGRRPPAPGR
Sbjct: 92  GKEFFLAAAVASIIDIGRRPPAPGR 116



>Os01g0729900 Conserved hypothetical protein
          Length = 488

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 52/68 (76%)

Query: 43  IERRLAQGFTGLLXXXXXXXXXXXXSHKRIPFEIDLPVVPFGASRGARAGKEFFLAAAVA 102
           I  RLAQGFTGLL            SHKRIPFEIDLPVVPFGASRGARAGKEFF AAAVA
Sbjct: 18  IADRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARAGKEFFPAAAVA 77

Query: 103 SIIDIGRR 110
           S+IDIG R
Sbjct: 78  SVIDIGGR 85



>Os02g0510400 Hypothetical protein
          Length = 88

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 72  IPFEIDLPVVPFGASRGARAGKEFFLAAAVASIIDIGRR 110
           IPFEIDLPVVPFGAS GARAGKEFF AAAVAS+IDIGRR
Sbjct: 23  IPFEIDLPVVPFGASWGARAGKEFFPAAAVASVIDIGRR 61



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.148    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,869,001
Number of extensions: 84789
Number of successful extensions: 229
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)