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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0510400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0404) R2 : 0.128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.5 (0.318) R2dE : 0.119 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.14 (0.0854) R2dN8 : 0.00671 R2N8 : 0.00912
σ : 0.76
deviance : 265.98
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 996.3
memory length : 1059
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
263.09 0.762 3.5 -1.31 0.171 16 -0.523 -80.2 -0.145 4.17 996.3 1071 -- --
296.7 0.808 3.29 0.0912 0.217 0.889 -0.362 -- -0.179 4.01 996.3 1071 -- --
263.8 0.756 3.5 -1.3 0.169 16 -- -79.9 -0.141 4.59 996.4 1086 -- --
266.5 0.76 3.3 0.0815 0.106 1.86 -- -- -0.153 4.48 995.7 1106 -- --
265.32 0.759 3.5 -1.28 -- 16 -- -79.5 -0.137 -- 996.4 1083 -- --
298.92 0.811 3.29 0.11 0.201 -- -0.407 -- -0.187 3.92 -- -- -- --
299.4 0.81 3.29 0.115 0.198 -- -- -- -0.185 3.95 -- -- -- --
265.97 0.76 3.28 0.0185 -- 2.5 -- -- -0.14 -- 996.3 1060 -- --
264.66 0.758 3.28 -- 0.163 2.48 -- -- -0.135 4.5 996.3 1060 -- --
301.56 0.811 3.29 0.123 -- -- -- -- -0.179 -- -- -- -- --
299.75 0.81 3.29 -- 0.201 -- -- -- -0.198 3.94 -- -- -- --
265.98 0.76 3.28 -- -- 2.5 -- -- -0.14 -- 996.3 1059 -- --
301.96 0.811 3.29 -- -- -- -- -- -0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.12 atmosphere 995 1440 > th dose independent rect. 18 9
4 259.59 atmosphere 995 1440 > th dose independent rect. 18 7
6 260.11 atmosphere 995 1440 < th dose independent rect. 18 1
29 260.11 atmosphere 995 1440 < th dose dependent rect. 18 1
53 260.62 atmosphere 995 1440 > th dose independent rect. 18 19
60 260.94 atmosphere 1000 270 < th dose dependent rect. 16 16
63 261.06 atmosphere 995 1440 > th dose independent rect. 18 1
65 261.27 atmosphere 995 1440 > th dose independent rect. 18 13
80 261.76 atmosphere 1000 270 < th dose independent rect. 18 1
82 261.76 atmosphere 1000 270 < th dose dependent rect. 18 1
84 261.79 atmosphere 995 4320 > th dose independent rect. 18 4
88 261.87 atmosphere 1000 30 < th dose independent rect. 19 3
97 261.91 atmosphere 1000 90 < th dose dependent rect. 18 15
104 261.99 atmosphere 1000 90 < th dose dependent rect. 19 3
192 262.95 atmosphere 995 1440 > th dose independent sin 9 NA
198 263.15 humidity 90 30 < th dose independent rect. 3 1
203 263.23 atmosphere 995 1440 < th dose independent sin 8 NA
204 263.29 humidity 80 90 < th dose independent rect. 2 3
205 263.29 humidity 80 90 < th dose dependent rect. 2 3
211 263.31 humidity 80 90 < th dose dependent rect. 2 1
217 263.35 humidity 90 10 < th dose dependent rect. 3 1
296 263.91 atmosphere 995 1440 > th dose independent rect. 7 20
355 264.28 atmosphere 995 1440 < th dose dependent sin 8 NA
361 264.35 atmosphere 995 1440 > th dose independent rect. 7 18
447 264.71 atmosphere 995 4320 > th dose independent rect. 8 11
513 264.86 atmosphere 995 1440 > th dose independent rect. 5 22
669 265.41 atmosphere 995 4320 < th dose independent rect. 2 17
693 265.42 atmosphere 995 4320 < th dose independent no NA NA
903 265.51 atmosphere 995 1440 > th dose independent rect. 21 22
931 265.60 atmosphere 995 4320 > th dose independent rect. 4 15
943 265.61 atmosphere 995 4320 > th dose independent rect. 24 19