BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0510400 Os02g0510400|AK119978
         (88 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0510400  Hypothetical protein                                149   4e-37
Os01g0729900  Conserved hypothetical protein                       94   3e-20
Os05g0285900  Conserved hypothetical protein                       71   2e-13

>Os02g0510400 Hypothetical protein
          Length = 88

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 77/88 (87%)

Query: 1  TASHRGSPACCXXXXXXXXXXXIPFEIDLPVVPFGASWGARAGKEFFPAAAVASVIDIGR 60
          TASHRGSPACC           IPFEIDLPVVPFGASWGARAGKEFFPAAAVASVIDIGR
Sbjct: 1  TASHRGSPACCRRNRRSFRGRRIPFEIDLPVVPFGASWGARAGKEFFPAAAVASVIDIGR 60

Query: 61 RLGQAGVEIGASVVNASFKKWFSNRRAS 88
          RLGQAGVEIGASVVNASFKKWFSNRRAS
Sbjct: 61 RLGQAGVEIGASVVNASFKKWFSNRRAS 88



>Os01g0729900 Conserved hypothetical protein
          Length = 488

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/51 (96%), Positives = 49/51 (96%)

Query: 23 IPFEIDLPVVPFGASWGARAGKEFFPAAAVASVIDIGRRLGQAGVEIGASV 73
          IPFEIDLPVVPFGAS GARAGKEFFPAAAVASVIDIG RLGQAGVEIGASV
Sbjct: 47 IPFEIDLPVVPFGASRGARAGKEFFPAAAVASVIDIGGRLGQAGVEIGASV 97



>Os05g0285900 Conserved hypothetical protein
          Length = 116

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 38/44 (86%)

Query: 23  IPFEIDLPVVPFGASWGARAGKEFFPAAAVASVIDIGRRLGQAG 66
           IPFEIDLPVVPFGAS GARAGKEFF AAAVAS+IDIGRR    G
Sbjct: 72  IPFEIDLPVVPFGASRGARAGKEFFLAAAVASIIDIGRRPPAPG 115



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,761,487
Number of extensions: 95164
Number of successful extensions: 171
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 88
Length of database: 17,035,801
Length adjustment: 58
Effective length of query: 30
Effective length of database: 14,007,389
Effective search space: 420221670
Effective search space used: 420221670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)