BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0244700 Os05g0244700|AK104978
(340 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0244700 Aminotransferase, class IV family protein 578 e-165
Os01g0238500 Similar to Branched-chain-amino-acid aminotran... 388 e-108
Os02g0273100 Aminotransferase, class IV family protein 270 1e-72
>Os05g0244700 Aminotransferase, class IV family protein
Length = 340
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 288/340 (84%), Positives = 288/340 (84%)
Query: 1 MQGEHHDHVPVYESGTEVFQKLQEKWNSTKHKRYRAMYSSVVGGIILDPSMMVIPIDDHM 60
MQGEHHDHVPVYESGTEVFQKLQEKWNSTKHKRYRAMYSSVVGGIILDPSMMVIPIDDHM
Sbjct: 1 MQGEHHDHVPVYESGTEVFQKLQEKWNSTKHKRYRAMYSSVVGGIILDPSMMVIPIDDHM 60
Query: 61 VHRGHGVFDTAMLSDGYLYELDSHLDRXXXXXXXXXXXXPFSRETLRAILVQMTAASKCR 120
VHRGHGVFDTAMLSDGYLYELDSHLDR PFSRETLRAILVQMTAASKCR
Sbjct: 61 VHRGHGVFDTAMLSDGYLYELDSHLDRLLLSASKAKISSPFSRETLRAILVQMTAASKCR 120
Query: 121 NGSIKYWLSAGPGDFLLSPKGCTXXXXXXXXXXXXXXXXXGGHPRLREGVRAITSTVPMK 180
NGSIKYWLSAGPGDFLLSPKGCT GGHPRLREGVRAITSTVPMK
Sbjct: 121 NGSIKYWLSAGPGDFLLSPKGCTAPAFYAVVIASAAAAAAGGHPRLREGVRAITSTVPMK 180
Query: 181 DPFFAAMKSVNYXXXXXXXXXXXXRGAYASVWVDGDGGVAEGPMMNVAFVTGGGDLVVPA 240
DPFFAAMKSVNY RGAYASVWVDGDGGVAEGPMMNVAFVTGGGDLVVPA
Sbjct: 181 DPFFAAMKSVNYLANALAMAEAEERGAYASVWVDGDGGVAEGPMMNVAFVTGGGDLVVPA 240
Query: 241 FDRVLSGCTXXXXXXXXXXXVDAGVLRSVGAARISAADARRCAEMMFVGSGLPLLPIVEW 300
FDRVLSGCT VDAGVLRSVGAARISAADARRCAEMMFVGSGLPLLPIVEW
Sbjct: 241 FDRVLSGCTARRLLALAPRLVDAGVLRSVGAARISAADARRCAEMMFVGSGLPLLPIVEW 300
Query: 301 DGQPVGDGQVGKIALALSDMLCEDIKAGLDRVLVPYDQAS 340
DGQPVGDGQVGKIALALSDMLCEDIKAGLDRVLVPYDQAS
Sbjct: 301 DGQPVGDGQVGKIALALSDMLCEDIKAGLDRVLVPYDQAS 340
>Os01g0238500 Similar to Branched-chain-amino-acid aminotransferase-like protein
3, chloroplast precursor
Length = 332
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/337 (58%), Positives = 239/337 (70%), Gaps = 11/337 (3%)
Query: 1 MQGEHHDHVPVYESGTEVFQKLQEKWNSTKHKRYRAMYSSVVGGIILDPSMMVIPIDDHM 60
+QGE D VPVYESG E+ QKLQEKW ST + AMYSSV+GGIILDP+MM +P+DDHM
Sbjct: 5 VQGE--DEVPVYESGAEIVQKLQEKWKSTAAP-FPAMYSSVLGGIILDPAMMSVPLDDHM 61
Query: 61 VHRGHGVFDTAMLSDGYLYELDSHLDRXXXXXXXXXXXXPFSRETLRAILVQMTAASKCR 120
VHRGHGVFDTAM+ DG+LYELD HLDR PF R+TLR+ILVQMTAAS CR
Sbjct: 62 VHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNCR 121
Query: 121 NGSIKYWLSAGPGDFLLSPKGCTXXXXXXXXXXXXXXXXXGGHPRLREGVRAITSTVPMK 180
GSI+YWLSAG GDFLLS GC + + R GVRA+T++VPMK
Sbjct: 122 RGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVIPT-------DYSQCRHGVRAVTTSVPMK 174
Query: 181 DPFFAAMKSVNYXXXXXXXXXXXXRGAYASVWVDGDGGVAEGPMMNVAFVTGGGDLVVPA 240
P FA MK+VNY RGA+ASVWVDG+G VAEGPM+NVAFVT G+LV+PA
Sbjct: 175 PPLFATMKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAGELVLPA 234
Query: 241 FDRVLSGCTXXXXXXXXXXXVDAGVLRSVGAARISAADARRC-AEMMFVGSGLPLLPIVE 299
FD++L+GCT V++G+L++V I+A +A+RC AEM FVGSGLP+LPIVE
Sbjct: 235 FDKILAGCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVE 294
Query: 300 WDGQPVGDGQVGKIALALSDMLCEDIKAGLDRVLVPY 336
WD Q +GDG+VGK +ALSD+L ED+K+G DR+ VPY
Sbjct: 295 WDDQLIGDGKVGKTMMALSDLLWEDMKSGPDRIAVPY 331
>Os02g0273100 Aminotransferase, class IV family protein
Length = 389
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/330 (42%), Positives = 191/330 (57%), Gaps = 9/330 (2%)
Query: 7 DHVPVYESGTEVFQKLQEKWNS-TKHKRYRAMYSSVVGGIILDPSMMVIPIDDHMVHRGH 65
+ VP+ S EV ++L E S T+++ Y AMYSS+ GGI +PS MVIPIDDHMVHRGH
Sbjct: 65 NDVPLL-SFAEVAERLDEFHASGTRNQNYMAMYSSIFGGITTNPSAMVIPIDDHMVHRGH 123
Query: 66 GVFDTAMLSDGYLYELDSHLDRXXXXXXXXXXXXPFSRETLRAILVQMTAASKCRNGSIK 125
GVFDTA + +G+LYEL+ HLDR PF R T+R+IL+Q +ASKC GS++
Sbjct: 124 GVFDTAAIMNGHLYELEQHLDRFLKSASMAKITLPFDRSTIRSILIQTVSASKCTQGSLR 183
Query: 126 YWLSAGPGDFLLSPKGCTXXXXXXXXXXXXXXXXXGGHPRLREGVRAITSTVPMKDPFFA 185
YWLS GPGDF LS GC + G + ITS++P+K FA
Sbjct: 184 YWLSVGPGDFQLSSAGCANSALYAIVIESPSLP-------VPAGCKVITSSIPIKSQQFA 236
Query: 186 AMKSVNYXXXXXXXXXXXXRGAYASVWVDGDGGVAEGPMMNVAFVTGGGDLVVPAFDRVL 245
MKSVNY G + +W+D +G VAEG MNV FVT +L++P FD++L
Sbjct: 237 VMKSVNYLPNALTKVEGEENGGFTGIWLDDEGFVAEGSNMNVGFVTQSKELLMPRFDKIL 296
Query: 246 SGCTXXXXXXXXXXXVDAGVLRSVGAARISAADARRCAEMMFVGSGLPLLPIVEWDGQPV 305
SGCT V G L + + +S + + EMM +GSG+ + P+V+WD Q +
Sbjct: 297 SGCTAKRVLTLAKQLVADGRLSGISSRNVSVQEGKAADEMMLIGSGILVKPVVQWDDQII 356
Query: 306 GDGQVGKIALALSDMLCEDIKAGLDRVLVP 335
G G+ G IA L +++ ED+++G V +P
Sbjct: 357 GSGKEGPIAQMLFNLILEDMRSGPPSVRIP 386
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,811,455
Number of extensions: 409362
Number of successful extensions: 848
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)