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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0244700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminotransferase, class IV family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0597) R2 : 0.691
β1 : 2.41 (0.336) R2dD : 0.13 R2D : -0.24
β2 : 2.08 (0.126) R2dC : 0.183 R2C : 0.133
β3 : -4.5 (0.17) R2dE : 0.647 R2E : 0.421
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.99 (0.921) R2dD*E : 0.0996 R2D*E : -0.0421
γ1 : 0.692 (0.135) R2dN8 : 0.0403 R2N8 : -0.103
σ : 0.903
deviance : 376.3
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_____
C
peak time of C : 6.76
E
wheather : temperature
threshold : 20.16
memory length : 1448
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
372.77 0.907 4.46 2.33 2.08 -4.51 -1.24 5.71 0.654 6.64 20.06 1426 -- --
395.91 0.927 4.67 0.853 2.01 -5.2 -1.04 -- 0.268 7.13 16.8 1561 -- --
376.3 0.903 4.44 2.41 2.08 -4.5 -- 5.99 0.692 6.76 20.16 1448 -- --
397.71 0.929 4.65 0.805 2.06 -4.96 -- -- 0.24 6.92 17.1 1488 -- --
461.6 1 4.59 1.66 -- -5.77 -- 5.32 0.492 -- 18 664 -- --
950.52 1.45 4.89 -0.939 1.97 -- -0.915 -- -0.813 7.19 -- -- -- --
952.59 1.45 4.88 -0.955 1.97 -- -- -- -0.81 7.29 -- -- -- --
482.26 1.02 4.71 0.632 -- -5.79 -- -- 0.202 -- 17.32 689 -- --
411.22 0.944 4.68 -- 2.1 -4.33 -- -- 0.0995 6.69 18.54 1409 -- --
1158.19 1.59 4.93 -0.921 -- -- -- -- -0.777 -- -- -- -- --
976.65 1.46 4.86 -- 1.96 -- -- -- -0.704 7.32 -- -- -- --
491.57 1.03 4.73 -- -- -5.49 -- -- 0.104 -- 17.72 674 -- --
1180.58 1.6 4.91 -- -- -- -- -- -0.675 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 369.10 temperature 20 1440 > th dose dependent rect. 20 20
35 372.53 temperature 20 1440 > th dose dependent rect. 9 23
38 372.64 temperature 20 1440 > th dose dependent rect. 13 23
40 372.74 temperature 20 1440 > th dose dependent sin 5 NA
41 372.78 temperature 20 1440 > th dose dependent no NA NA
44 372.87 temperature 20 1440 > th dose dependent rect. 11 23
47 372.98 temperature 20 1440 > th dose dependent rect. 2 23
55 373.22 temperature 20 1440 > th dose dependent rect. 24 23
68 373.59 temperature 20 1440 > th dose dependent rect. 4 23
199 382.31 humidity 90 43200 > th dose dependent rect. 21 1
215 383.58 temperature 20 1440 > th dose dependent sin 15 NA
285 388.92 humidity 90 43200 < th dose independent rect. 22 1
296 389.17 temperature 25 1440 > th dose independent rect. 7 17
309 389.49 temperature 30 1440 < th dose dependent rect. 2 12
350 390.09 temperature 30 1440 < th dose dependent sin 5 NA
393 390.78 temperature 25 1440 < th dose independent rect. 6 19
397 390.82 temperature 30 1440 < th dose dependent rect. 4 4
414 391.08 temperature 15 1440 > th dose dependent rect. 4 4
436 391.28 temperature 30 1440 < th dose dependent rect. 18 21
488 391.82 humidity 90 43200 < th dose independent rect. 17 6
499 392.00 humidity 90 43200 > th dose independent rect. 22 1
556 392.54 temperature 30 1440 < th dose dependent rect. 2 21
566 392.59 temperature 30 1440 < th dose dependent rect. 22 17
568 392.61 radiation 1 43200 > th dose independent rect. 17 2
611 393.00 temperature 30 1440 < th dose dependent rect. 3 7
655 393.40 temperature 30 1440 < th dose dependent rect. 13 23
670 393.51 temperature 30 1440 < th dose dependent rect. 22 23
713 393.96 temperature 30 1440 < th dose dependent no NA NA
764 394.48 temperature 30 1440 < th dose dependent rect. 11 23
799 394.76 temperature 30 1440 < th dose dependent rect. 9 23
855 395.51 radiation 1 43200 < th dose dependent rect. 17 6
857 395.53 radiation 1 43200 < th dose dependent rect. 17 2
864 395.56 humidity 90 43200 > th dose dependent rect. 17 7
866 395.57 temperature 30 1440 < th dose dependent rect. 6 23
917 396.06 radiation 1 43200 < th dose dependent rect. 17 10
925 396.12 humidity 90 43200 > th dose dependent rect. 4 20
962 396.57 temperature 20 43200 > th dose independent rect. 20 1
967 396.63 humidity 90 43200 > th dose independent rect. 17 6
969 396.65 humidity 90 43200 < th dose independent rect. 18 1