BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0244700 Os05g0244700|AK104978
         (340 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57850.1  | chr5:23435548-23437287 REVERSE LENGTH=374          295   2e-80

>AT5G57850.1 | chr5:23435548-23437287 REVERSE LENGTH=374
          Length = 373

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/332 (46%), Positives = 208/332 (62%), Gaps = 14/332 (4%)

Query: 8   HVPVYESGTEVFQKLQEKWNSTKHKRYRAMYSSVVGGIILDPSMMVIPIDDHMVHRGHGV 67
           +VPV  S  EV ++L+    +   +++ AMYSSVV GI  DP+ MV+P+DDHMVHRGHGV
Sbjct: 53  NVPVL-SSYEVGERLKL---ARGGQQFLAMYSSVVDGITTDPAAMVLPLDDHMVHRGHGV 108

Query: 68  FDTAMLSDGYLYELDSHLDRXXXXXXXXXXXXPFSRETLRAILVQMTAASKCRNGSIKYW 127
           FDTA++ +GYLYELD HLDR            PF RET++ IL+Q  + S CR+GS++YW
Sbjct: 109 FDTALIINGYLYELDQHLDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCRDGSLRYW 168

Query: 128 LSAGPGDFLLSPKGCTXXXXXXXXXXXXXXXXXGGHPRLREGVRAITSTVPMKDPFFAAM 187
           LSAGPGDFLLSP  C                    +P    GV+ +TS++P+K P FA +
Sbjct: 169 LSAGPGDFLLSPSQCLKPTLYAIVIKTNFAI----NPI---GVKVVTSSIPIKPPEFATV 221

Query: 188 KSVNYXXXXXXXXXXXXRGAYASVWVDGDGGVAEGPMMNVAFVTGGG-DLVVPAFDRVLS 246
           KSVNY            +GAYA +WV  DG +AEGP MNVAFV  GG +LV+P FD VLS
Sbjct: 222 KSVNYLPNVLSQMEAEAKGAYAGIWVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLS 281

Query: 247 GCTXXXXXXXXXXXVDAGVLRSVGAARISAADARRCAEMMFVGSGLPLLPIVEWDGQPVG 306
           GCT           V  G+L++V    ++  D ++  EMM +GSG+P+ P+++WD + +G
Sbjct: 282 GCTAKRTLTLAEQLVSKGILKTVKVMDVTVEDGKKADEMMLIGSGIPIRPVIQWDEEFIG 341

Query: 307 DGQVGKIALALSDMLCEDIKAGLD--RVLVPY 336
           +G+ G IA AL D+L ED+++G    RVLVPY
Sbjct: 342 EGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,355,746
Number of extensions: 222709
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)