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Os01g0238500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0625) R2 : 0.793
β1 : -4.39 (0.256) R2dD : 0.215 R2D : 0.296
β2 : 2.64 (0.146) R2dC : 0.147 R2C : 0.0212
β3 : -3.43 (0.304) R2dE : 0.113 R2E : 0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.51 (0.853) R2dD*E : 0.0454 R2D*E : 0.11
γ1 : -2.51 (0.131) R2dN8 : 0.268 R2N8 : -0.0384
σ : 1.05
deviance : 506.7
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_____
C
peak time of C : 6.43
E
wheather : humidity
threshold : 86
memory length : 7229
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.77
open length of G : 0.922

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
498.12 1.05 13.9 -4.41 2.6 -3.2 2.06 -6.27 -2.51 6.49 86.01 7204 5.76 0.958
590.88 1.13 13.9 -4.97 2.68 -3.42 2.5 -- -2.49 6.5 86.39 7200 5.78 0.983
506.7 1.05 13.9 -4.39 2.64 -3.43 -- -6.51 -2.51 6.43 86 7229 5.77 0.922
567.46 1.11 13.7 -5.07 2.65 -3.82 -- -- -2.53 6.19 87.79 7214 5.77 0.931
839.57 1.35 13.9 -4.88 -- -3.35 -- -6 -2.42 -- 75.96 8397 5.85 0.984
787.46 1.32 13.5 -6.86 2.63 -- 1.97 -- -1.85 6.38 -- -- -- --
796.97 1.32 13.6 -6.84 2.63 -- -- -- -1.86 6.32 -- -- -- --
904.65 1.4 13.7 -4.85 -- -4.45 -- -- -2.25 -- 86.08 8398 5.78 0.756
1045.67 1.51 13.3 -- 2.38 -5.4 -- -- -1.78 6.6 89.42 7197 5.58 0.863
1157.37 1.59 13.6 -6.77 -- -- -- -- -1.8 -- -- -- -- --
2028.83 2.11 13.4 -- 2.54 -- -- -- -1.09 6.47 -- -- -- --
1270.48 1.66 14 -- -- -6.77 -- -- -3.05 -- 85.46 7062 6.11 0.0535
2365.17 2.27 13.4 -- -- -- -- -- -1.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 535.50 radiation 10.0 14400 < th dose independent rect. 6 1
3 538.36 radiation 10.0 14400 < th dose independent rect. 1 6
9 538.83 radiation 10.0 14400 < th dose independent rect. 21 10
11 538.92 radiation 10.0 14400 < th dose independent rect. 19 12
12 539.02 humidity 80.0 14400 < th dose independent rect. 21 1
15 541.05 humidity 80.0 14400 > th dose independent rect. 18 13
16 541.57 wind 9.0 14400 > th dose independent rect. 13 6
17 542.12 humidity 80.0 14400 > th dose independent rect. 21 1
19 543.48 wind 9.0 14400 > th dose dependent rect. 20 21
21 544.94 humidity 80.0 43200 > th dose independent rect. 16 5
24 545.71 humidity 80.0 43200 < th dose independent rect. 16 5
25 545.84 humidity 80.0 43200 > th dose independent rect. 14 8
26 545.92 wind 9.0 14400 > th dose dependent rect. 18 23
29 546.03 radiation 20.0 14400 < th dose independent rect. 17 16
43 546.50 wind 9.0 14400 > th dose dependent rect. 13 7
44 546.97 humidity 80.0 14400 > th dose independent rect. 19 9
49 547.74 radiation 10.0 14400 < th dose independent rect. 13 1
51 547.81 wind 9.0 14400 > th dose dependent rect. 1 18
52 547.83 wind 9.0 14400 > th dose dependent rect. 3 16
56 548.01 radiation 10.0 14400 > th dose independent rect. 6 1
74 548.45 wind 9.0 14400 > th dose independent rect. 14 3
75 548.52 humidity 80.0 14400 < th dose dependent rect. 20 3
76 548.60 humidity 80.0 43200 < th dose independent rect. 14 8
77 548.67 humidity 80.0 43200 < th dose independent rect. 17 3
78 548.67 wind 7.0 14400 > th dose dependent rect. 15 2
80 548.96 wind 1.0 43200 < th dose dependent rect. 10 1
84 549.59 wind 9.0 14400 < th dose independent rect. 13 6
85 549.61 humidity 80.0 14400 < th dose independent rect. 18 13
95 550.23 humidity 90.0 14400 < th dose dependent rect. 20 10
99 550.61 humidity 80.0 43200 > th dose dependent rect. 20 2
101 550.71 precipitation 0.1 43200 > th dose dependent rect. 17 4
103 550.93 humidity 50.0 14400 > th dose dependent rect. 1 1
106 551.08 wind 9.0 14400 < th dose independent rect. 14 3
116 551.94 wind 9.0 14400 > th dose dependent rect. 11 9
124 552.40 atmosphere 995.0 43200 > th dose independent rect. 18 2
135 553.48 wind 9.0 14400 > th dose independent rect. 3 16
144 553.69 wind 9.0 14400 > th dose dependent sin 23 NA
150 553.96 precipitation 0.1 43200 > th dose dependent rect. 13 7
153 554.07 humidity 70.0 43200 < th dose independent rect. 17 1
154 554.07 humidity 70.0 43200 > th dose dependent rect. 17 3
159 554.16 precipitation 0.1 43200 > th dose dependent rect. 14 13
164 554.35 humidity 90.0 14400 < th dose dependent rect. 21 5
166 554.40 wind 9.0 14400 > th dose independent rect. 20 21
169 554.46 precipitation 0.1 43200 > th dose dependent rect. 17 11
172 554.56 radiation 10.0 14400 > th dose dependent rect. 6 1
207 554.95 precipitation 0.1 43200 > th dose dependent sin 17 NA
219 555.11 precipitation 0.1 43200 > th dose dependent rect. 13 11
231 555.34 wind 9.0 14400 > th dose dependent rect. 11 23
254 555.54 humidity 80.0 14400 < th dose independent rect. 20 4
256 555.60 wind 9.0 14400 > th dose dependent rect. 11 21
279 556.06 atmosphere 995.0 43200 < th dose independent rect. 18 1
282 556.06 atmosphere 995.0 43200 < th dose dependent rect. 18 1
292 556.13 wind 9.0 14400 > th dose independent rect. 13 19
302 556.22 wind 1.0 43200 < th dose dependent rect. 2 2
333 556.58 wind 9.0 14400 > th dose independent rect. 11 21
338 556.70 humidity 60.0 43200 > th dose independent rect. 10 7
370 557.15 precipitation 0.1 43200 < th dose independent rect. 17 1
372 557.15 precipitation 0.1 43200 < th dose dependent rect. 17 1
390 557.41 humidity 70.0 43200 > th dose dependent rect. 18 1
400 557.72 humidity 70.0 43200 < th dose dependent rect. 15 1
425 558.18 precipitation 0.1 43200 > th dose independent rect. 17 1
432 558.24 radiation 10.0 14400 < th dose independent rect. 17 21
433 558.24 precipitation 0.1 43200 > th dose dependent rect. 3 1
437 558.32 precipitation 0.1 43200 > th dose independent rect. 17 3
440 558.35 precipitation 0.1 43200 > th dose independent rect. 3 1
441 558.37 humidity 80.0 14400 > th dose independent sin 12 NA
446 558.48 precipitation 0.1 43200 < th dose independent rect. 3 1
447 558.48 precipitation 0.1 43200 < th dose dependent rect. 3 1
452 558.58 wind 9.0 14400 > th dose dependent rect. 9 10
459 558.62 wind 9.0 14400 > th dose independent rect. 18 23
480 558.89 radiation 10.0 14400 < th dose independent rect. 10 21
482 558.91 precipitation 0.1 43200 > th dose independent rect. 13 5
487 558.96 precipitation 0.1 43200 < th dose independent rect. 17 3
488 558.96 precipitation 0.1 43200 < th dose dependent rect. 17 3
495 559.05 precipitation 0.1 43200 < th dose independent rect. 13 5
496 559.05 precipitation 0.1 43200 < th dose dependent rect. 13 5
515 559.37 radiation 10.0 14400 < th dose independent rect. 2 12
518 559.38 radiation 10.0 14400 < th dose independent rect. 4 10
578 560.05 precipitation 0.1 43200 > th dose independent rect. 14 10
584 560.18 wind 9.0 14400 > th dose independent sin 22 NA
587 560.19 precipitation 0.1 43200 < th dose independent rect. 14 10
589 560.19 precipitation 0.1 43200 < th dose dependent rect. 14 10
600 560.30 radiation 10.0 14400 < th dose independent rect. 12 20
627 560.59 precipitation 0.1 43200 > th dose independent rect. 16 8
647 560.75 precipitation 0.1 43200 < th dose independent rect. 16 8
650 560.75 precipitation 0.1 43200 < th dose dependent rect. 16 8
654 560.82 humidity 90.0 43200 < th dose dependent rect. 17 1
661 560.86 radiation 20.0 14400 < th dose independent sin 10 NA
718 561.28 radiation 40.0 14400 > th dose dependent rect. 12 1
865 562.33 humidity 60.0 43200 > th dose independent rect. 14 1
872 562.35 humidity 60.0 43200 < th dose independent rect. 13 3
924 562.93 radiation 10.0 14400 < th dose independent rect. 10 5
930 562.99 precipitation 0.1 43200 < th dose independent sin 18 NA
931 562.99 precipitation 0.1 43200 < th dose dependent sin 18 NA
933 563.00 precipitation 0.1 43200 > th dose independent sin 18 NA
969 563.42 wind 9.0 14400 > th dose dependent no NA NA
972 563.42 wind 9.0 14400 > th dose dependent rect. 9 23
984 563.50 wind 9.0 14400 > th dose independent rect. 9 10