BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0238500 Os01g0238500|AK067076
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0238500 Similar to Branched-chain-amino-acid aminotran... 681 0.0
Os05g0244700 Aminotransferase, class IV family protein 454 e-128
Os02g0273100 Aminotransferase, class IV family protein 349 2e-96
>Os01g0238500 Similar to Branched-chain-amino-acid aminotransferase-like protein
3, chloroplast precursor
Length = 332
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MGSYVQGEDEVPVYESGAEIVQKLQEKWKSTAAPFPAMYSSVLGGIILDPAMMSVPLDDH 60
MGSYVQGEDEVPVYESGAEIVQKLQEKWKSTAAPFPAMYSSVLGGIILDPAMMSVPLDDH
Sbjct: 1 MGSYVQGEDEVPVYESGAEIVQKLQEKWKSTAAPFPAMYSSVLGGIILDPAMMSVPLDDH 60
Query: 61 MVHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNC 120
MVHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNC
Sbjct: 61 MVHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNC 120
Query: 121 RRGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVIPTDYSQCRHGVRAVTTSVPMKPPLFAT 180
RRGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVIPTDYSQCRHGVRAVTTSVPMKPPLFAT
Sbjct: 121 RRGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVIPTDYSQCRHGVRAVTTSVPMKPPLFAT 180
Query: 181 MKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAGELVLPAFDKILA 240
MKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAGELVLPAFDKILA
Sbjct: 181 MKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAGELVLPAFDKILA 240
Query: 241 GCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWDDQLI 300
GCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWDDQLI
Sbjct: 241 GCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWDDQLI 300
Query: 301 GDGKVGKTMMALSDLLWEDMKSGPDRIAVPYK 332
GDGKVGKTMMALSDLLWEDMKSGPDRIAVPYK
Sbjct: 301 GDGKVGKTMMALSDLLWEDMKSGPDRIAVPYK 332
>Os05g0244700 Aminotransferase, class IV family protein
Length = 340
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/337 (67%), Positives = 277/337 (82%), Gaps = 11/337 (3%)
Query: 5 VQGE--DEVPVYESGAEIVQKLQEKWKSTAAP-FPAMYSSVLGGIILDPAMMSVPLDDHM 61
+QGE D VPVYESG E+ QKLQEKW ST + AMYSSV+GGIILDP+MM +P+DDHM
Sbjct: 1 MQGEHHDHVPVYESGTEVFQKLQEKWNSTKHKRYRAMYSSVVGGIILDPSMMVIPIDDHM 60
Query: 62 VHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNCR 121
VHRGHGVFDTAM+ DG+LYELD HLDR L SA+KA+I +PF R+TLR+ILVQMTAAS CR
Sbjct: 61 VHRGHGVFDTAMLSDGYLYELDSHLDRLLLSASKAKISSPFSRETLRAILVQMTAASKCR 120
Query: 122 RGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVIPT-------DYSQCRHGVRAVTTSVPMK 174
GSI+YWLSAG GDFLLS GC PAFYAVVI + + + R GVRA+T++VPMK
Sbjct: 121 NGSIKYWLSAGPGDFLLSPKGCTAPAFYAVVIASAAAAAAGGHPRLREGVRAITSTVPMK 180
Query: 175 PPLFATMKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAGELVLPA 234
P FA MK+VNYL N L++ +AE+RGA+ASVWVDG+G VAEGPM+NVAFVT G+LV+PA
Sbjct: 181 DPFFAAMKSVNYLANALAMAEAEERGAYASVWVDGDGGVAEGPMMNVAFVTGGGDLVVPA 240
Query: 235 FDKILAGCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVE 294
FD++L+GCTA+RLLALAPRLV++G+L++V I+A +A+RC AEM FVGSGLP+LPIVE
Sbjct: 241 FDRVLSGCTARRLLALAPRLVDAGVLRSVGAARISAADARRC-AEMMFVGSGLPLLPIVE 299
Query: 295 WDDQLIGDGKVGKTMMALSDLLWEDMKSGPDRIAVPY 331
WD Q +GDG+VGK +ALSD+L ED+K+G DR+ VPY
Sbjct: 300 WDGQPVGDGQVGKIALALSDMLCEDIKAGLDRVLVPY 336
>Os02g0273100 Aminotransferase, class IV family protein
Length = 389
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/330 (51%), Positives = 231/330 (70%), Gaps = 5/330 (1%)
Query: 3 SYVQGEDEVPVYESGAEIVQKLQEKWKSTA--APFPAMYSSVLGGIILDPAMMSVPLDDH 60
+ V G D VP+ S AE+ ++L E S + AMYSS+ GGI +P+ M +P+DDH
Sbjct: 60 TIVTGND-VPLL-SFAEVAERLDEFHASGTRNQNYMAMYSSIFGGITTNPSAMVIPIDDH 117
Query: 61 MVHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNC 120
MVHRGHGVFDTA I++GHLYEL+ HLDRFL+SA+ A+I PF R T+RSIL+Q +AS C
Sbjct: 118 MVHRGHGVFDTAAIMNGHLYELEQHLDRFLKSASMAKITLPFDRSTIRSILIQTVSASKC 177
Query: 121 RRGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVIPTDYSQCRHGVRAVTTSVPMKPPLFAT 180
+GS+RYWLS G GDF LSSAGCA A YA+VI + G + +T+S+P+K FA
Sbjct: 178 TQGSLRYWLSVGPGDFQLSSAGCANSALYAIVIESPSLPVPAGCKVITSSIPIKSQQFAV 237
Query: 181 MKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAGELVLPAFDKILA 240
MK+VNYLPN L+ ++ E+ G F +W+D EG VAEG +NV FVT + EL++P FDKIL+
Sbjct: 238 MKSVNYLPNALTKVEGEENGGFTGIWLDDEGFVAEGSNMNVGFVTQSKELLMPRFDKILS 297
Query: 241 GCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWDDQLI 300
GCTAKR+L LA +LV G L +++R+++ E K + EM +GSG+ V P+V+WDDQ+I
Sbjct: 298 GCTAKRVLTLAKQLVADGRLSGISSRNVSVQEGK-AADEMMLIGSGILVKPVVQWDDQII 356
Query: 301 GDGKVGKTMMALSDLLWEDMKSGPDRIAVP 330
G GK G L +L+ EDM+SGP + +P
Sbjct: 357 GSGKEGPIAQMLFNLILEDMRSGPPSVRIP 386
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,479,044
Number of extensions: 542163
Number of successful extensions: 1145
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)