BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0238500 Os01g0238500|AK067076
         (332 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57850.1  | chr5:23435548-23437287 REVERSE LENGTH=374          358   2e-99
AT3G05190.1  | chr3:1471457-1475067 FORWARD LENGTH=556             66   2e-11

>AT5G57850.1 | chr5:23435548-23437287 REVERSE LENGTH=374
          Length = 373

 Score =  358 bits (919), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/325 (55%), Positives = 234/325 (72%), Gaps = 7/325 (2%)

Query: 10  EVPVYESGAEIVQKLQEKWKSTAAPFPAMYSSVLGGIILDPAMMSVPLDDHMVHRGHGVF 69
            VPV  S  E+ ++L  K       F AMYSSV+ GI  DPA M +PLDDHMVHRGHGVF
Sbjct: 53  NVPVLSS-YEVGERL--KLARGGQQFLAMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVF 109

Query: 70  DTAMILDGHLYELDPHLDRFLRSAAKARIGTPFPRDTLRSILVQMTAASNCRRGSIRYWL 129
           DTA+I++G+LYELD HLDR LRSA+ A+I  PF R+T++ IL+Q  + S CR GS+RYWL
Sbjct: 110 DTALIINGYLYELDQHLDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCRDGSLRYWL 169

Query: 130 SAGGGDFLLSSAGCAGPAFYAVVIPTDYSQCRHGVRAVTTSVPMKPPLFATMKNVNYLPN 189
           SAG GDFLLS + C  P  YA+VI T+++    GV+ VT+S+P+KPP FAT+K+VNYLPN
Sbjct: 170 SAGPGDFLLSPSQCLKPTLYAIVIKTNFAINPIGVKVVTSSIPIKPPEFATVKSVNYLPN 229

Query: 190 VLSIMDAEDRGAFASVWVDGEGNVAEGPMVNVAFVTAAG-ELVLPAFDKILAGCTAKRLL 248
           VLS M+AE +GA+A +WV  +G +AEGP +NVAFV   G ELV+P FD +L+GCTAKR L
Sbjct: 230 VLSQMEAEAKGAYAGIWVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTL 289

Query: 249 ALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWDDQLIGDGKVGKT 308
            LA +LV  G+LK V    +  ++ K+   EM  +GSG+P+ P+++WD++ IG+GK G  
Sbjct: 290 TLAEQLVSKGILKTVKVMDVTVEDGKKAD-EMMLIGSGIPIRPVIQWDEEFIGEGKEGPI 348

Query: 309 MMALSDLLWEDMKSGPD--RIAVPY 331
             AL DLL EDM+SGP   R+ VPY
Sbjct: 349 AKALLDLLLEDMRSGPPSVRVLVPY 373



>AT3G05190.1 | chr3:1471457-1475067 FORWARD LENGTH=556
          Length = 555

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 17/280 (6%)

Query: 43  LGGIILDPAMMSVPLDDHMVHRGHGVFDTAMILDGHLYELDPHLDRFLRSAAKARIGTPF 102
           +G  IL   M  V + D +V  G  V++   I  G +++L+ HLDR   SA         
Sbjct: 266 VGDEILPREMAKVSVFDSVVQGGDSVWEGLRIYKGKIFKLEEHLDRLFDSAKALAFDNVP 325

Query: 103 PRDTLRSILVQMTAASNCRRGSIRYWLSAGGGDFLLSSAGCAGPAFYAVVI------PTD 156
            R+ ++  + + T  +N    +    LS   G  + S    A   +   +I      P  
Sbjct: 326 AREEVKEAIFR-TLITNGMFDNTHIRLSLTRGKKVTSGMSPAYNRYGCTLIVLAEWKPPV 384

Query: 157 YSQCRHGVRAVTTSVPMKPP--LFATMKNVNYLPNVLSIMDAEDRGAFASVWVDGEGNVA 214
           Y     G+  VT +     P  L + + + N L N+L+ +++ +  A  ++ +D +G V+
Sbjct: 385 YDN-EGGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIESNNTNAADAIMLDKDGYVS 443

Query: 215 EGPMVNVAFVTAAGELVLPAFDKILAGCTAKRLLALAPRLVESGLLKAVTTRHIAADEAK 274
           E    N+ F+   G ++ P  D  L G T   ++ L  +  E+ +L+    R I+  E  
Sbjct: 444 ETNATNI-FMVKKGCVLTPHADYCLPGITRATVMELVVK--ENFILEE---RRISLSEF- 496

Query: 275 RCSAEMAFVGSGLPVLPIVEWDDQLIGDGKVGKTMMALSD 314
             + E+   G+   + P+V+ D ++IGDGKVG     L +
Sbjct: 497 HTANEVWTTGTMGELSPVVKIDGRVIGDGKVGPVTRTLQN 536



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,328,146
Number of extensions: 296374
Number of successful extensions: 623
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)