BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0243300 Os05g0243300|AK108395
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0243300  Similar to 50S ribosomal protein L13                300   6e-82
Os05g0243200  Similar to Ribosomal protein L13                    115   2e-26
Os01g0749200  Similar to 50S ribosomal protein L13                 81   5e-16
Os01g0897400                                                       79   1e-15

>Os05g0243300 Similar to 50S ribosomal protein L13
          Length = 191

 Score =  300 bits (767), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 150/191 (78%)

Query: 1   MKALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLN 60
           MKALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLN
Sbjct: 1   MKALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLN 60

Query: 61  AKDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMXXXXXXXXXXXX 120
           AKDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEAIRKAVM            
Sbjct: 61  AKDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMRMLPRNRLRDDR 120

Query: 121 XXXXXIFSGNEHPFHDRPLEPFMXXXXXXXXXXXXXXXXXXXXXXXXQDRAAAASTKDEE 180
                IFSGNEHPFHDRPLEPFM                        QDRAAAASTKDEE
Sbjct: 121 DRKLRIFSGNEHPFHDRPLEPFMMPRRQVREMRPRARRALLRAQKKEQDRAAAASTKDEE 180

Query: 181 NAKNAKSEITA 191
           NAKNAKSEITA
Sbjct: 181 NAKNAKSEITA 191



>Os05g0243200 Similar to Ribosomal protein L13
          Length = 160

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/59 (93%), Positives = 55/59 (93%)

Query: 2   KALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLN 60
            ALA LRRINLDGLRW VFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVEN DMCVVLN
Sbjct: 101 SALADLRRINLDGLRWCVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENRDMCVVLN 159



>Os01g0749200 Similar to 50S ribosomal protein L13
          Length = 233

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%)

Query: 17  WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 76
           W V DA  ++LGRLAS IAV ++GK++ TY P V+ G   VV+NA+ ++V+G+K + K+Y
Sbjct: 96  WYVVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLY 155

Query: 77  YWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMXXXXXXXXXXXXXXXXXIFSGNEHP 133
             H+G  G +KE       ++ P   I  AV                  ++ G EHP
Sbjct: 156 RRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHP 212



>Os01g0897400 
          Length = 86

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 41/66 (62%)

Query: 126 IFSGNEHPFHDRPLEPFMXXXXXXXXXXXXXXXXXXXXXXXXQDRAAAASTKDEENAKNA 185
           IFSGNEHPFHDRPLEPF+                        QDRAAAASTKDEEN KNA
Sbjct: 21  IFSGNEHPFHDRPLEPFVMPPRQVREMRPRARRVLIRAQKKEQDRAAAASTKDEENVKNA 80

Query: 186 KSEITA 191
           KSEITA
Sbjct: 81  KSEITA 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,868,069
Number of extensions: 150997
Number of successful extensions: 270
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)