Os05g0243200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein L13.
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Os05g0243200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein L13.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.62 | 0.272 | 8.62 | -0.797 | 1.11 | -0.834 | 0.118 | -1.67 | -0.285 | 5.32 | 24.54 | 23 | -- | -- |
| 38.12 | 0.29 | 8.65 | -1.02 | 1.09 | -0.678 | -0.221 | -- | -0.331 | 5.36 | 24.54 | 23 | -- | -- |
| 33.62 | 0.272 | 8.62 | -0.8 | 1.1 | -0.819 | -- | -1.62 | -0.285 | 5.31 | 24.54 | 23 | -- | -- |
| 38.17 | 0.29 | 8.65 | -1.02 | 1.11 | -0.671 | -- | -- | -0.341 | 5.36 | 25.09 | 18 | -- | -- |
| 94.84 | 0.456 | 8.63 | -0.735 | -- | -0.561 | -- | -1.47 | -0.211 | -- | 24 | 6 | -- | -- |
| 44.88 | 0.314 | 8.62 | -0.865 | 1.04 | -- | -0.142 | -- | -0.208 | 5.78 | -- | -- | -- | -- |
| 44.93 | 0.314 | 8.62 | -0.866 | 1.04 | -- | -- | -- | -0.208 | 5.8 | -- | -- | -- | -- |
| 98.5 | 0.464 | 8.65 | -0.927 | -- | -0.426 | -- | -- | -0.251 | -- | 24.1 | 9 | -- | -- |
| 63.31 | 0.373 | 8.61 | -- | 1.05 | -0.288 | -- | -- | -0.161 | 5.64 | 25.09 | 18 | -- | -- |
| 101.42 | 0.471 | 8.64 | -0.833 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 64.68 | 0.376 | 8.6 | -- | 1.03 | -- | -- | -- | -0.111 | 5.83 | -- | -- | -- | -- |
| 109.35 | 0.487 | 8.6 | -- | -- | 0.802 | -- | -- | 0.00173 | -- | 43.26 | 359 | -- | -- |
| 119.74 | 0.511 | 8.62 | -- | -- | -- | -- | -- | -0.0907 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 5 | 33.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 6 | 33.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 10 | 33.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 15 | 33.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 28 | 33.33 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 9 |
| 52 | 33.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 60 | 33.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 63 | 33.54 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 84 | 33.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 91 | 33.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 92 | 33.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 93 | 33.72 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 94 | 33.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 96 | 33.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 102 | 33.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 109 | 33.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 123 | 33.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 148 | 33.93 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 175 | 34.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 205 | 34.10 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 281 | 34.33 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 290 | 34.36 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 313 | 34.42 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 9 |
| 550 | 34.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 684 | 35.32 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 707 | 35.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 723 | 35.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 752 | 35.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 774 | 35.48 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 803 | 35.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 827 | 35.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 894 | 35.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 22 |
| 921 | 35.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 969 | 35.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |