BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0243200 Os05g0243200|AK061317
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0243200  Similar to Ribosomal protein L13                    213   6e-56
Os05g0243300  Similar to 50S ribosomal protein L13                115   2e-26

>Os05g0243200 Similar to Ribosomal protein L13
          Length = 160

 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 111/146 (76%)

Query: 15  MMGRIASPLIPPKPGRITWPRXXXXXXXXXXXXXXXLWSTRCWSNASAXXXXXXXXXXXX 74
           MMGRIASPLIPPKPGRITWPR               LWSTRCWSNASA            
Sbjct: 15  MMGRIASPLIPPKPGRITWPRSGRTPGTPMTSSPPMLWSTRCWSNASALLWSPPPRIRSP 74

Query: 75  XXXXXXXXTYNEPLLAAILVSTAKSCSALADLRRINLDGLRWCVFDAKGQVLGRLASQIA 134
                   TYNEPLLAAILVSTAKSCSALADLRRINLDGLRWCVFDAKGQVLGRLASQIA
Sbjct: 75  SPSLSRSWTYNEPLLAAILVSTAKSCSALADLRRINLDGLRWCVFDAKGQVLGRLASQIA 134

Query: 135 VVLQGKDKPTYAPHVENRDMCVVLNG 160
           VVLQGKDKPTYAPHVENRDMCVVLNG
Sbjct: 135 VVLQGKDKPTYAPHVENRDMCVVLNG 160



>Os05g0243300 Similar to 50S ribosomal protein L13
          Length = 191

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/59 (93%), Positives = 55/59 (93%)

Query: 101 SALADLRRINLDGLRWCVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENRDMCVVLN 159
            ALA LRRINLDGLRW VFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVEN DMCVVLN
Sbjct: 2   KALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLN 60



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,830,735
Number of extensions: 102946
Number of successful extensions: 177
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)