Os05g0243300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L13.
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Os05g0243300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L13.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.86 | 0.168 | 12.4 | 0.308 | 0.399 | 0.219 | 0.365 | 0.521 | 0.284 | 23.8 | 22 | 142 | -- | -- |
| 14.11 | 0.175 | 12.4 | 0.154 | 0.397 | 0.215 | 0.155 | -- | 0.231 | 23.9 | 21.9 | 157 | -- | -- |
| 13.33 | 0.17 | 12.4 | 0.283 | 0.39 | 0.211 | -- | 0.424 | 0.284 | 23.8 | 21.91 | 172 | -- | -- |
| 14.07 | 0.175 | 12.4 | 0.148 | 0.387 | 0.212 | -- | -- | 0.252 | 23.9 | 21.8 | 139 | -- | -- |
| 19.14 | 0.204 | 12.4 | 0.186 | -- | 0.3 | -- | 0.2 | 0.243 | -- | 24.71 | 879 | -- | -- |
| 16.33 | 0.189 | 12.4 | 0.217 | 0.34 | -- | 0.0741 | -- | 0.31 | 23.6 | -- | -- | -- | -- |
| 16.36 | 0.189 | 12.4 | 0.214 | 0.339 | -- | -- | -- | 0.309 | 23.6 | -- | -- | -- | -- |
| 19.09 | 0.204 | 12.4 | 0.131 | -- | 0.325 | -- | -- | 0.187 | -- | 24.8 | 864 | -- | -- |
| 14.59 | 0.178 | 12.4 | -- | 0.398 | 0.233 | -- | -- | 0.228 | 23.9 | 21.9 | 136 | -- | -- |
| 23.59 | 0.227 | 12.4 | 0.224 | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
| 17.57 | 0.196 | 12.4 | -- | 0.342 | -- | -- | -- | 0.285 | 23.6 | -- | -- | -- | -- |
| 19.4 | 0.205 | 12.4 | -- | -- | 0.351 | -- | -- | 0.169 | -- | 24.73 | 878 | -- | -- |
| 24.9 | 0.233 | 12.4 | -- | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.67 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 2 | 12.67 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 5 | 12.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 6 | 12.77 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 20 | 12.85 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 40 | 12.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 45 | 13.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 57 | 13.06 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 60 | 13.07 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 71 | 13.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 72 | 13.11 | wind | 3.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 90 | 13.16 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 107 | 13.18 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 109 | 13.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 111 | 13.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 114 | 13.19 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 135 | 13.22 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 139 | 13.23 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 146 | 13.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 156 | 13.25 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 179 | 13.28 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 200 | 13.29 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 229 | 13.32 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 241 | 13.33 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 247 | 13.34 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 275 | 13.36 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 377 | 13.44 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 412 | 13.45 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 437 | 13.46 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 468 | 13.48 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 484 | 13.48 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 496 | 13.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 508 | 13.49 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 511 | 13.49 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 530 | 13.50 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 531 | 13.51 | wind | 1.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 532 | 13.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 557 | 13.51 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 610 | 13.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 628 | 13.54 | temperature | 25.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 630 | 13.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 649 | 13.54 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 684 | 13.56 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 749 | 13.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 813 | 13.59 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 838 | 13.60 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 883 | 13.62 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 884 | 13.62 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 898 | 13.62 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 899 | 13.62 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 936 | 13.62 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 949 | 13.63 | temperature | 25.0 | 720 | < th | dose dependent | sin | 17 | NA |