BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0243300 Os05g0243300|AK108395
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01790.1  | chr3:283880-285583 REVERSE LENGTH=206              208   1e-54
AT1G78630.1  | chr1:29575997-29577406 FORWARD LENGTH=242           67   4e-12

>AT3G01790.1 | chr3:283880-285583 REVERSE LENGTH=206
          Length = 205

 Score =  208 bits (529), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 110/142 (77%)

Query: 2   KALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNA 61
           KA+AG++RINLDGLRWRVFDA+GQVLGRLASQI+ VLQ KDKPTY P+ ++GD+C+VLNA
Sbjct: 17  KAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNA 76

Query: 62  KDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMXXXXXXXXXXXXX 121
           K+I  TGRK+TDK Y WHTGYIGHLKER LKDQM KDPTE IRKAV              
Sbjct: 77  KEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRD 136

Query: 122 XXXXIFSGNEHPFHDRPLEPFM 143
               IF G EHPF D+PLEPF+
Sbjct: 137 RKLRIFEGGEHPFGDKPLEPFV 158



>AT1G78630.1 | chr1:29575997-29577406 FORWARD LENGTH=242
          Length = 241

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 1/125 (0%)

Query: 17  WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 76
           W V DA  ++LGRLAS IA  ++GK+  +Y P V+ G   +V+NA+ ++V+G+K   K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 77  YWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMXXXXXXXXXXXXXXXXXIFSGNEHPFH- 135
             H+G  G +         ++ P   +  AV                  ++ G +HP   
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 136 DRPLE 140
            +PL+
Sbjct: 225 QKPLD 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,125,576
Number of extensions: 98863
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)