Os01g0749200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L13.
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Os01g0749200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L13.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.8 | 0.443 | 13.4 | -1.03 | 1.62 | -0.914 | 0.208 | 0.19 | -0.853 | 20.8 | 29.1 | 1641 | -- | -- |
| 88.73 | 0.439 | 13.4 | -0.989 | 1.62 | -0.885 | 0.213 | -- | -0.846 | 20.8 | 29 | 1631 | -- | -- |
| 88.94 | 0.439 | 13.4 | -1.03 | 1.62 | -0.908 | -- | 0.148 | -0.85 | 20.8 | 29.07 | 1634 | -- | -- |
| 88.87 | 0.439 | 13.4 | -0.993 | 1.62 | -0.887 | -- | -- | -0.848 | 20.8 | 29 | 1631 | -- | -- |
| 155.03 | 0.58 | 13.5 | -1.5 | -- | -1.47 | -- | 0.963 | -1.27 | -- | 26 | 610 | -- | -- |
| 121.08 | 0.516 | 13.4 | -0.709 | 1.68 | -- | 0.245 | -- | -0.725 | 20.7 | -- | -- | -- | -- |
| 121.28 | 0.516 | 13.4 | -0.717 | 1.68 | -- | -- | -- | -0.725 | 20.7 | -- | -- | -- | -- |
| 152.68 | 0.575 | 13.4 | -1.17 | -- | -1.59 | -- | -- | -1.21 | -- | 25.9 | 633 | -- | -- |
| 113.34 | 0.496 | 13.4 | -- | 1.62 | -0.703 | -- | -- | -0.713 | 20.7 | 28.95 | 1640 | -- | -- |
| 280.37 | 0.782 | 13.3 | -0.72 | -- | -- | -- | -- | -0.738 | -- | -- | -- | -- | -- |
| 134.84 | 0.543 | 13.4 | -- | 1.68 | -- | -- | -- | -0.645 | 20.7 | -- | -- | -- | -- |
| 188.87 | 0.64 | 13.4 | -- | -- | -1.42 | -- | -- | -1.03 | -- | 25.85 | 610 | -- | -- |
| 294.04 | 0.8 | 13.3 | -- | -- | -- | -- | -- | -0.658 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 3 | 87.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 5 | 87.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 6 | 87.58 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 10 | 87.70 | temperature | 25.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 15 | 88.29 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 16 | 88.36 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 27 | 88.72 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 56 | 89.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 88 | 90.35 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 128 | 91.13 | temperature | 25.0 | 90 | > th | dose dependent | sin | 22 | NA |
| 137 | 91.40 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 142 | 91.51 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 150 | 91.58 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 155 | 91.64 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 174 | 91.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 215 | 92.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 216 | 92.18 | temperature | 25.0 | 720 | < th | dose independent | rect. | 5 | 7 |
| 217 | 92.18 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 240 | 92.33 | temperature | 25.0 | 270 | < th | dose independent | sin | 23 | NA |
| 259 | 92.49 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 262 | 92.51 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 270 | 92.57 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 285 | 92.66 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 294 | 92.71 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 298 | 92.72 | temperature | 25.0 | 270 | > th | dose independent | sin | 23 | NA |
| 315 | 92.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 334 | 92.93 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 340 | 92.95 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 350 | 93.01 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 351 | 93.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 364 | 93.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 373 | 93.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 374 | 93.10 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 375 | 93.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 452 | 93.29 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 464 | 93.32 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 479 | 93.35 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 484 | 93.38 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 514 | 93.46 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 524 | 93.49 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 537 | 93.51 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 606 | 93.63 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 655 | 93.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 677 | 93.71 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 690 | 93.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 700 | 93.76 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 710 | 93.79 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 720 | 93.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 721 | 93.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 722 | 93.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 737 | 93.83 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 769 | 93.86 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 801 | 93.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 819 | 93.94 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 828 | 93.94 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 848 | 93.98 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 905 | 94.09 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 906 | 94.09 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 6 |
| 931 | 94.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 961 | 94.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 977 | 94.20 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |