BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0749200 Os01g0749200|AK104146
         (233 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0749200  Similar to 50S ribosomal protein L13                379   e-106
Os05g0243300  Similar to 50S ribosomal protein L13                 72   2e-13

>Os01g0749200 Similar to 50S ribosomal protein L13
          Length = 233

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/196 (93%), Positives = 183/196 (93%)

Query: 38  GGLSVRCEQSEKQKRQPLSALVPREQRFMFEGDELCGPDIWNTTWYPKAADHVTTEKTWY 97
           GGLSVRCEQSEKQKRQPLSALVPREQRFMFEGDELCGPDIWNTTWYPKAADHVTTEKTWY
Sbjct: 38  GGLSVRCEQSEKQKRQPLSALVPREQRFMFEGDELCGPDIWNTTWYPKAADHVTTEKTWY 97

Query: 98  VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGXXXXXXXXXXXXXSGKKRSQKLYRR 157
           VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMG             SGKKRSQKLYRR
Sbjct: 98  VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 157

Query: 158 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHPHEAQK 217
           HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHPHEAQK
Sbjct: 158 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHPHEAQK 217

Query: 218 PVPLPIKDKRIQKSEK 233
           PVPLPIKDKRIQKSEK
Sbjct: 218 PVPLPIKDKRIQKSEK 233



>Os05g0243300 Similar to 50S ribosomal protein L13
          Length = 191

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 62/117 (52%)

Query: 96  WYVVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGXXXXXXXXXXXXXSGKKRSQKLY 155
           W V DA  ++LGRLAS IAV ++GK++ TY P V+ G             +G+K + K+Y
Sbjct: 17  WRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNAKDISVTGRKMTDKIY 76

Query: 156 RRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHP 212
             H+G  G +KE       ++ P   I  AV  MLP+ RL       L+++ G EHP
Sbjct: 77  YWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMRMLPRNRLRDDRDRKLRIFSGNEHP 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,645,190
Number of extensions: 263919
Number of successful extensions: 526
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)