BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0217000 Os05g0217000|AK062517
         (67 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0217000  Protein of unknown function DUF1070 family pro...    78   1e-15
Os01g0657000  Protein of unknown function DUF1070 family pro...    73   5e-14
Os02g0264800  Protein of unknown function DUF1070 family pro...    66   4e-12

>Os05g0217000 Protein of unknown function DUF1070 family protein
          Length = 67

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 43/67 (64%)

Query: 1  MARIPXXXXXXXXXXXXXXXXXXXXXXXXTSDGTSVDQGIAYLLMIVALVLTYLIHPLDA 60
          MARIP                        TSDGTSVDQGIAYLLMIVALVLTYLIHPLDA
Sbjct: 1  MARIPFAAIVVAILSFAIAAAAQAPAPSPTSDGTSVDQGIAYLLMIVALVLTYLIHPLDA 60

Query: 61 SSAYKLF 67
          SSAYKLF
Sbjct: 61 SSAYKLF 67



>Os01g0657000 Protein of unknown function DUF1070 family protein
          Length = 69

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 36/38 (94%)

Query: 30 TSDGTSVDQGIAYLLMIVALVLTYLIHPLDASSAYKLF 67
          TSDGTSVDQGIAY+LM VAL LTYLIHPLDASSAYKLF
Sbjct: 32 TSDGTSVDQGIAYVLMFVALALTYLIHPLDASSAYKLF 69



>Os02g0264800 Protein of unknown function DUF1070 family protein
          Length = 73

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 35/38 (92%)

Query: 30 TSDGTSVDQGIAYLLMIVALVLTYLIHPLDASSAYKLF 67
           SDGTS+D GIAY+LM+VALVLTYLIHPLDASS YKLF
Sbjct: 36 VSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,098,809
Number of extensions: 18780
Number of successful extensions: 58
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 3
Length of query: 67
Length of database: 17,035,801
Length adjustment: 39
Effective length of query: 28
Effective length of database: 14,999,455
Effective search space: 419984740
Effective search space used: 419984740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)