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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0657000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1070 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.034) R2 : 0.00886
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.0716) R2dN8 : 0.0114 R2N8 : 0.00886
σ : 0.641
deviance : 188.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.88 0.635 2.85 0.1 0.11 0.534 -0.456 -0.103 0.0616 3.71 1005 2 -- --
182.88 0.635 2.85 0.0976 0.109 0.537 -0.463 -- 0.0619 3.77 1005 2 -- --
183.37 0.636 2.85 0.108 0.113 0.533 -- -0.132 0.0647 2.17 1005 2 -- --
183.4 0.635 2.85 0.104 0.113 0.537 -- -- 0.0656 2.18 1005 2 -- --
184.13 0.635 2.85 0.112 -- 0.536 -- -0.102 0.066 -- 1005 2 -- --
186.94 0.641 2.83 0.0855 0.124 -- -0.447 -- 0.149 4.26 -- -- -- --
187.42 0.641 2.83 0.0894 0.124 -- -- -- 0.152 3.17 -- -- -- --
184.14 0.635 2.85 0.109 -- 0.538 -- -- 0.0662 -- 1005 2 -- --
183.68 0.635 2.86 -- 0.114 0.53 -- -- 0.0544 2.21 1005 2 -- --
188.29 0.641 2.83 0.0947 -- -- -- -- 0.155 -- -- -- -- --
187.63 0.641 2.83 -- 0.125 -- -- -- 0.142 3.17 -- -- -- --
184.46 0.635 2.85 -- -- 0.532 -- -- 0.055 -- 1005 2 -- --
188.53 0.641 2.83 -- -- -- -- -- 0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.85 humidity 80.0 90 < th dose independent rect. 2 3
2 170.86 humidity 90.0 30 < th dose independent rect. 3 1
3 170.86 humidity 80.0 90 < th dose dependent rect. 2 3
5 170.88 humidity 90.0 10 < th dose dependent rect. 3 1
18 171.24 humidity 80.0 90 < th dose dependent rect. 24 3
20 171.41 humidity 80.0 90 < th dose independent rect. 24 3
30 172.19 atmosphere 1005.0 10 > th dose dependent rect. 3 1
54 177.74 atmosphere 1010.0 270 > th dose independent rect. 12 1
64 178.27 humidity 70.0 4320 > th dose independent rect. 21 1
68 178.60 atmosphere 1005.0 10 > th dose independent rect. 3 1
70 178.68 temperature 20.0 10 < th dose dependent rect. 3 1
77 178.91 atmosphere 1005.0 90 > th dose dependent rect. 11 12
81 179.17 atmosphere 1005.0 30 > th dose dependent rect. 20 3
90 179.41 temperature 10.0 30 > th dose dependent rect. 23 21
93 179.49 atmosphere 995.0 30 > th dose dependent rect. 11 12
108 179.61 humidity 50.0 4320 < th dose independent rect. 10 4
133 179.68 temperature 25.0 30 > th dose independent rect. 20 3
135 179.69 atmosphere 1005.0 30 > th dose dependent rect. 3 20
145 179.81 temperature 20.0 90 < th dose independent rect. 2 1
148 179.86 temperature 10.0 30 > th dose dependent rect. 23 23
149 179.87 wind 3.0 720 > th dose independent rect. 11 1
152 179.88 wind 3.0 30 > th dose dependent rect. 20 1
155 179.91 wind 1.0 720 > th dose dependent rect. 11 1
158 179.95 atmosphere 1005.0 10 > th dose dependent rect. 20 1
165 180.05 radiation 30.0 43200 < th dose dependent rect. 21 1
166 180.05 humidity 50.0 4320 < th dose dependent rect. 11 3
172 180.07 temperature 20.0 10 < th dose independent rect. 3 1
201 180.12 humidity 90.0 30 < th dose independent rect. 20 1
204 180.15 atmosphere 1005.0 90 > th dose dependent rect. 13 10
205 180.16 temperature 10.0 1440 > th dose independent rect. 21 1
208 180.16 temperature 30.0 1440 < th dose independent rect. 21 1
212 180.16 humidity 50.0 1440 > th dose independent rect. 21 1
218 180.16 atmosphere 995.0 1440 > th dose independent rect. 21 1
219 180.16 radiation 1.0 1440 < th dose independent rect. 21 1
240 180.16 temperature 10.0 1440 > th dose independent rect. 22 23
244 180.19 atmosphere 1005.0 30 > th dose independent rect. 20 1
254 180.23 atmosphere 995.0 720 > th dose dependent rect. 11 1
260 180.25 humidity 90.0 30 < th dose dependent rect. 20 1
261 180.26 temperature 30.0 720 < th dose independent rect. 11 1
265 180.28 wind 3.0 30 > th dose independent rect. 20 1
269 180.31 temperature 25.0 30 > th dose independent rect. 20 1
271 180.32 temperature 30.0 30 < th dose independent rect. 11 12
276 180.36 wind 9.0 30 < th dose independent rect. 20 1
277 180.36 temperature 10.0 30 > th dose independent rect. 20 1
279 180.36 temperature 30.0 30 < th dose independent rect. 20 1
280 180.36 humidity 50.0 30 > th dose independent rect. 20 1
284 180.36 atmosphere 1010.0 30 < th dose independent rect. 20 1
286 180.36 radiation 1.0 30 < th dose independent rect. 20 1
291 180.36 precipitation 0.1 30 < th dose independent rect. 20 1
292 180.36 temperature 10.0 30 > th dose independent rect. 21 23
293 180.36 radiation 1.0 30 < th dose dependent rect. 20 1
298 180.36 precipitation 0.1 30 < th dose dependent rect. 20 1
299 180.38 temperature 10.0 30 > th dose dependent rect. 20 1
300 180.38 atmosphere 995.0 90 > th dose dependent rect. 1 22
305 180.45 wind 9.0 1440 < th dose independent rect. 21 1
306 180.45 humidity 50.0 30 > th dose dependent rect. 20 1
313 180.52 wind 9.0 30 < th dose dependent rect. 20 1
316 180.53 temperature 30.0 30 < th dose dependent rect. 20 1
318 180.54 wind 5.0 30 < th dose independent rect. 20 1
331 180.69 wind 9.0 10 < th dose independent rect. 23 23
344 180.78 radiation 10.0 4320 < th dose dependent rect. 23 1
346 180.78 radiation 10.0 90 < th dose dependent rect. 13 2
350 180.79 atmosphere 1005.0 30 > th dose dependent rect. 8 15
353 180.80 atmosphere 1005.0 30 > th dose independent rect. 20 3
363 180.83 precipitation 0.1 1440 < th dose independent rect. 23 1
365 180.83 atmosphere 1015.0 30 < th dose dependent rect. 20 1
366 180.83 precipitation 0.1 1440 < th dose dependent rect. 23 1
369 180.86 wind 9.0 1440 < th dose independent rect. 23 1
370 180.86 temperature 10.0 1440 > th dose independent rect. 23 1
373 180.86 temperature 30.0 1440 < th dose independent rect. 23 1
377 180.86 humidity 50.0 1440 > th dose independent rect. 23 1
387 180.86 atmosphere 995.0 1440 > th dose independent rect. 23 1
388 180.86 radiation 1.0 1440 < th dose independent rect. 23 1
409 180.86 temperature 10.0 1440 > th dose independent rect. 24 23
418 180.87 precipitation 0.1 270 > th dose independent rect. 13 1
421 180.87 atmosphere 1005.0 30 > th dose dependent rect. 22 1
422 180.87 precipitation 0.1 270 > th dose dependent rect. 13 1
427 180.89 atmosphere 1005.0 30 > th dose independent rect. 22 1
430 180.90 wind 3.0 30 < th dose dependent rect. 22 1
436 180.92 wind 3.0 30 < th dose independent rect. 22 1
437 180.92 humidity 80.0 30 > th dose independent rect. 22 1
439 180.93 temperature 25.0 30 > th dose independent rect. 22 1
444 180.94 humidity 90.0 30 < th dose independent rect. 22 1
445 180.94 precipitation 0.1 30 < th dose independent rect. 22 1
448 180.94 precipitation 0.1 30 < th dose dependent rect. 22 1
451 180.95 wind 3.0 10 < th dose independent rect. 12 5
454 180.96 temperature 10.0 30 > th dose independent rect. 22 1
456 180.96 temperature 30.0 30 < th dose independent rect. 22 1
457 180.96 humidity 50.0 30 > th dose independent rect. 22 1
461 180.96 atmosphere 1010.0 30 < th dose independent rect. 22 1
463 180.96 radiation 1.0 30 < th dose independent rect. 22 1
468 180.96 temperature 10.0 30 > th dose independent rect. 23 23
469 180.96 temperature 10.0 30 > th dose dependent rect. 22 1
472 180.96 radiation 1.0 30 < th dose dependent rect. 22 1
477 180.97 wind 1.0 30 > th dose independent rect. 22 1
497 180.97 humidity 50.0 30 > th dose dependent rect. 22 1
499 180.97 radiation 10.0 43200 < th dose dependent rect. 23 1
500 180.98 humidity 50.0 10 > th dose independent rect. 23 23
501 180.98 atmosphere 1015.0 30 < th dose independent rect. 23 23
503 180.99 temperature 30.0 30 < th dose dependent rect. 22 1
504 180.99 temperature 20.0 30 > th dose dependent rect. 20 3
506 181.00 humidity 90.0 30 < th dose dependent rect. 22 1
512 181.02 radiation 10.0 270 < th dose independent rect. 9 5
517 181.03 atmosphere 1005.0 270 > th dose dependent rect. 19 1
522 181.05 humidity 80.0 10 < th dose independent rect. 24 2
528 181.05 humidity 80.0 10 < th dose dependent rect. 24 2
537 181.06 wind 1.0 30 > th dose dependent rect. 22 1
555 181.07 atmosphere 1015.0 30 < th dose dependent rect. 22 1
557 181.07 temperature 25.0 720 > th dose dependent rect. 23 9
561 181.08 radiation 10.0 270 < th dose dependent rect. 10 4
562 181.08 atmosphere 1005.0 30 > th dose dependent rect. 11 17
563 181.09 radiation 10.0 270 < th dose independent rect. 12 1
571 181.12 atmosphere 995.0 30 > th dose dependent rect. 3 9
582 181.14 wind 5.0 30 < th dose independent rect. 23 21
583 181.15 humidity 80.0 4320 < th dose independent rect. 23 1
597 181.18 temperature 25.0 720 < th dose independent rect. 24 4
643 181.23 temperature 10.0 720 > th dose dependent rect. 23 1
679 181.30 radiation 20.0 30 < th dose independent rect. 13 3
687 181.31 atmosphere 1005.0 30 > th dose dependent rect. 11 22
694 181.33 atmosphere 1005.0 30 > th dose dependent rect. 6 17
701 181.36 humidity 80.0 4320 < th dose dependent rect. 23 1
730 181.38 humidity 90.0 30 < th dose independent rect. 20 3
734 181.38 humidity 80.0 4320 < th dose dependent rect. 23 10
735 181.38 atmosphere 1015.0 30 < th dose dependent rect. 23 23
758 181.46 precipitation 0.1 30 < th dose independent rect. 23 23
763 181.46 precipitation 0.1 30 < th dose dependent rect. 23 23
765 181.47 temperature 10.0 30 > th dose dependent rect. 23 12
776 181.52 wind 7.0 90 < th dose independent rect. 23 12
779 181.52 temperature 10.0 30 > th dose dependent rect. 21 23
793 181.55 atmosphere 995.0 10 > th dose dependent rect. 3 11
795 181.57 wind 1.0 10 > th dose independent rect. 3 1
803 181.58 wind 7.0 720 < th dose independent rect. 4 7
804 181.58 temperature 25.0 720 > th dose independent rect. 23 10
806 181.59 wind 9.0 90 < th dose dependent rect. 23 12
808 181.60 wind 5.0 30 > th dose independent rect. 11 1
816 181.61 atmosphere 1015.0 10 < th dose dependent rect. 4 23
818 181.62 atmosphere 1005.0 30 > th dose dependent sin 18 NA
833 181.65 atmosphere 995.0 30 > th dose independent rect. 23 23
838 181.67 atmosphere 1000.0 720 > th dose independent rect. 11 1
850 181.70 atmosphere 1005.0 90 > th dose dependent rect. 15 8
855 181.71 wind 9.0 30 < th dose independent rect. 21 23
859 181.71 atmosphere 1015.0 30 < th dose dependent rect. 23 21
860 181.71 radiation 40.0 90 < th dose dependent rect. 19 21
868 181.74 radiation 1.0 720 > th dose independent rect. 11 1
874 181.76 temperature 10.0 720 > th dose independent rect. 11 1
876 181.76 atmosphere 1015.0 720 < th dose independent rect. 11 1
877 181.76 precipitation 0.1 720 < th dose independent rect. 11 1
878 181.76 temperature 10.0 1440 > th dose independent rect. 12 12
881 181.76 temperature 10.0 1440 > th dose independent rect. 24 12
884 181.76 atmosphere 995.0 1440 > th dose independent rect. 24 12
885 181.76 temperature 10.0 720 > th dose independent rect. 12 23
887 181.76 precipitation 0.1 720 < th dose dependent rect. 11 1
889 181.77 humidity 80.0 30 > th dose independent rect. 20 3
890 181.77 wind 1.0 30 > th dose independent rect. 11 12
892 181.77 wind 1.0 720 < th dose dependent rect. 24 2
894 181.78 atmosphere 1000.0 30 > th dose independent rect. 11 12
899 181.78 wind 9.0 30 < th dose dependent rect. 23 21
905 181.80 temperature 25.0 720 < th dose independent rect. 24 8
907 181.80 atmosphere 1010.0 30 < th dose independent rect. 23 21
912 181.81 wind 5.0 30 < th dose independent rect. 23 18
937 181.82 humidity 80.0 4320 < th dose dependent rect. 4 4
938 181.82 temperature 25.0 720 > th dose dependent rect. 22 11
945 181.84 precipitation 0.1 30 < th dose independent rect. 11 12
946 181.84 precipitation 0.1 30 < th dose dependent rect. 11 12
961 181.88 temperature 20.0 30 > th dose independent rect. 23 21
968 181.89 temperature 10.0 30 > th dose independent rect. 11 12
970 181.89 temperature 10.0 30 > th dose independent rect. 23 12
971 181.89 humidity 50.0 30 > th dose independent rect. 23 12
972 181.89 atmosphere 995.0 30 > th dose independent rect. 23 12
973 181.89 atmosphere 1015.0 30 < th dose independent rect. 11 12
985 181.91 atmosphere 1015.0 720 < th dose independent rect. 23 1
991 181.91 wind 5.0 10 < th dose dependent rect. 12 5