BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0657000 Os01g0657000|AK108727
(69 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46330.1 | chr2:19018730-19019108 REVERSE LENGTH=74 83 3e-17
AT3G61640.1 | chr3:22810283-22810629 REVERSE LENGTH=75 79 7e-16
AT5G53250.1 | chr5:21603715-21604007 FORWARD LENGTH=64 65 6e-12
AT5G24105.1 | chr5:8152097-8152656 FORWARD LENGTH=64 52 9e-08
>AT2G46330.1 | chr2:19018730-19019108 REVERSE LENGTH=74
Length = 73
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 53/71 (74%), Gaps = 6/71 (8%)
Query: 5 SRASVLVMA----IVAMLATLVNAQ--APAPAPTSDGTSVDQGIAYVLMFVALALTYLIH 58
SR SV A + A++ +L AQ APAPAPTSDGTS+DQGIAY+LM VAL LTYLIH
Sbjct: 3 SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62
Query: 59 PLDASSAYKLF 69
PLDASS+Y F
Sbjct: 63 PLDASSSYSFF 73
>AT3G61640.1 | chr3:22810283-22810629 REVERSE LENGTH=75
Length = 74
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 7/72 (9%)
Query: 5 SRASVLVMA----IVAMLATLVNAQ--APAPAPTSDGTSVDQGIAYVLMFVALALTYLIH 58
SR SV V+A + A+++ AQ APAP+PTSDGTS+DQGIAY+LM VAL LTYLIH
Sbjct: 3 SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62
Query: 59 PLDA-SSAYKLF 69
PLDA SS+Y F
Sbjct: 63 PLDASSSSYTFF 74
>AT5G53250.1 | chr5:21603715-21604007 FORWARD LENGTH=64
Length = 63
Score = 65.1 bits (157), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 33/36 (91%)
Query: 23 NAQAPAPAPTSDGTSVDQGIAYVLMFVALALTYLIH 58
++ +PAPAPTSDGTS+DQGIAYVLM VALALTY IH
Sbjct: 28 HSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63
>AT5G24105.1 | chr5:8152097-8152656 FORWARD LENGTH=64
Length = 63
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 32 TSDGTSVDQGIAYVLMFVALALTYLIH 58
TSDGT++DQGIAYVLM VAL LTYLIH
Sbjct: 37 TSDGTTIDQGIAYVLMLVALVLTYLIH 63
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,037,105
Number of extensions: 27467
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 11,106,569
Length adjustment: 41
Effective length of query: 28
Effective length of database: 9,982,513
Effective search space: 279510364
Effective search space used: 279510364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)