BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0657000 Os01g0657000|AK108727
         (69 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0657000  Protein of unknown function DUF1070 family pro...   133   3e-32
Os05g0217000  Protein of unknown function DUF1070 family pro...    73   4e-14
Os02g0264800  Protein of unknown function DUF1070 family pro...    66   5e-12

>Os01g0657000 Protein of unknown function DUF1070 family protein
          Length = 69

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MALISRASVLVMAIVAMLATLVNAQAPAPAPTSDGTSVDQGIAYVLMFVALALTYLIHPL 60
          MALISRASVLVMAIVAMLATLVNAQAPAPAPTSDGTSVDQGIAYVLMFVALALTYLIHPL
Sbjct: 1  MALISRASVLVMAIVAMLATLVNAQAPAPAPTSDGTSVDQGIAYVLMFVALALTYLIHPL 60

Query: 61 DASSAYKLF 69
          DASSAYKLF
Sbjct: 61 DASSAYKLF 69



>Os05g0217000 Protein of unknown function DUF1070 family protein
          Length = 67

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 36/38 (94%)

Query: 32 TSDGTSVDQGIAYVLMFVALALTYLIHPLDASSAYKLF 69
          TSDGTSVDQGIAY+LM VAL LTYLIHPLDASSAYKLF
Sbjct: 30 TSDGTSVDQGIAYLLMIVALVLTYLIHPLDASSAYKLF 67



>Os02g0264800 Protein of unknown function DUF1070 family protein
          Length = 73

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query: 33 SDGTSVDQGIAYVLMFVALALTYLIHPLDASSAYKLF 69
          SDGTS+D GIAY+LM VAL LTYLIHPLDASS YKLF
Sbjct: 37 SDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,828,343
Number of extensions: 54818
Number of successful extensions: 555
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 3
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)