Os05g0217000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1070 family protein.
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Os05g0217000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1070 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 838.54 | 1.36 | 5.06 | -2.73 | 0.678 | -1.29 | 1.38 | 2.26 | -1.24 | 19.3 | 24.4 | 357 | 10.7 | -- |
| 847.93 | 1.36 | 5.06 | -2.39 | 0.703 | -1.25 | 1.86 | -- | -1.17 | 19.8 | 24.12 | 239 | 8.91 | -- |
| 841.86 | 1.35 | 5.08 | -2.89 | 0.73 | -1.38 | -- | 2.96 | -1.28 | 19.8 | 24.3 | 356 | 11.1 | -- |
| 862.67 | 1.37 | 5.06 | -2.4 | 0.62 | -1.29 | -- | -- | -1.18 | 20 | 24.1 | 226 | 8.27 | -- |
| 862.91 | 1.37 | 5.03 | -2.77 | -- | -1.19 | -- | 2.65 | -1.23 | -- | 24.8 | 413 | 10.5 | -- |
| 911.17 | 1.42 | 4.95 | -2.1 | 0.509 | -- | 2.59 | -- | -0.837 | 19 | -- | -- | -- | -- |
| 917.2 | 1.42 | 4.94 | -2.14 | 0.69 | -- | -- | -- | -0.822 | 16.5 | -- | -- | -- | -- |
| 870.13 | 1.37 | 5 | -2.34 | -- | -1.37 | -- | -- | -1.1 | -- | 25.74 | 576 | 9.17 | -- |
| 1008.93 | 1.48 | 4.94 | -- | 0.606 | -0.936 | -- | -- | -0.794 | 18.8 | 24.05 | 216 | 8.06 | -- |
| 942.65 | 1.43 | 4.94 | -2.17 | -- | -- | -- | -- | -0.84 | -- | -- | -- | -- | -- |
| 1037.69 | 1.51 | 4.89 | -- | 0.73 | -- | -- | -- | -0.584 | 16.4 | -- | -- | -- | -- |
| 1012.61 | 1.48 | 4.9 | -- | -- | -1.17 | -- | -- | -0.682 | -- | 26.5 | 650 | 8.65 | -- |
| 1066.3 | 1.52 | 4.88 | -- | -- | -- | -- | -- | -0.6 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 830.93 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 3 | 838.16 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 7 |
| 6 | 839.36 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 13 |
| 7 | 839.57 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 5 |
| 11 | 840.64 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 12 | 840.64 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 16 | 842.01 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 11 |
| 17 | 842.14 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 3 |
| 33 | 844.93 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 6 |
| 60 | 848.20 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 10 |
| 64 | 848.90 | temperature | 25 | 270 | < th | dose independent | sin | 17 | NA |
| 70 | 849.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 75 | 849.90 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 94 | 850.06 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 123 | 851.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 124 | 851.13 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 133 | 851.48 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 154 | 852.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 156 | 852.79 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 16 |
| 157 | 852.81 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 174 | 853.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 175 | 853.30 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 192 | 853.49 | temperature | 25 | 270 | > th | dose independent | sin | 16 | NA |
| 201 | 853.68 | temperature | 25 | 270 | < th | dose independent | sin | 13 | NA |
| 236 | 854.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 239 | 854.34 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 277 | 854.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 294 | 855.35 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 317 | 855.70 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 336 | 855.84 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 344 | 855.99 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 349 | 856.08 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 352 | 856.13 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 11 |
| 435 | 857.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 437 | 857.55 | wind | 1 | 10 | > th | dose independent | rect. | 21 | 10 |
| 513 | 858.55 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 518 | 858.67 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 557 | 858.74 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 558 | 858.74 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 16 |
| 616 | 859.40 | humidity | 70 | 720 | > th | dose independent | sin | 16 | NA |
| 656 | 859.89 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 674 | 860.15 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 788 | 861.33 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 794 | 861.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 7 |
| 799 | 861.47 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 901 | 862.20 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 945 | 862.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 14 |
| 947 | 862.65 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 951 | 862.71 | temperature | 10 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 953 | 862.74 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 17 |
| 959 | 862.83 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 18 |