BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0217000 Os05g0217000|AK062517
         (67 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46330.1  | chr2:19018730-19019108 REVERSE LENGTH=74            71   1e-13
AT3G61640.1  | chr3:22810283-22810629 REVERSE LENGTH=75            67   3e-12
AT5G24105.1  | chr5:8152097-8152656 FORWARD LENGTH=64              50   2e-07
AT5G53250.1  | chr5:21603715-21604007 FORWARD LENGTH=64            49   4e-07

>AT2G46330.1 | chr2:19018730-19019108 REVERSE LENGTH=74
          Length = 73

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 36/38 (94%)

Query: 30 TSDGTSVDQGIAYLLMIVALVLTYLIHPLDASSAYKLF 67
          TSDGTS+DQGIAYLLM+VALVLTYLIHPLDASS+Y  F
Sbjct: 36 TSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSYSFF 73



>AT3G61640.1 | chr3:22810283-22810629 REVERSE LENGTH=75
          Length = 74

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 36/39 (92%), Gaps = 1/39 (2%)

Query: 30 TSDGTSVDQGIAYLLMIVALVLTYLIHPLDA-SSAYKLF 67
          TSDGTS+DQGIAYLLM+VALVLTYLIHPLDA SS+Y  F
Sbjct: 36 TSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSSYTFF 74



>AT5G24105.1 | chr5:8152097-8152656 FORWARD LENGTH=64
          Length = 63

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 27/27 (100%)

Query: 30 TSDGTSVDQGIAYLLMIVALVLTYLIH 56
          TSDGT++DQGIAY+LM+VALVLTYLIH
Sbjct: 37 TSDGTTIDQGIAYVLMLVALVLTYLIH 63



>AT5G53250.1 | chr5:21603715-21604007 FORWARD LENGTH=64
          Length = 63

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 25/27 (92%)

Query: 30 TSDGTSVDQGIAYLLMIVALVLTYLIH 56
          TSDGTS+DQGIAY+LM+VAL LTY IH
Sbjct: 37 TSDGTSIDQGIAYVLMMVALALTYFIH 63



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 683,292
Number of extensions: 11780
Number of successful extensions: 32
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 4
Length of query: 67
Length of database: 11,106,569
Length adjustment: 39
Effective length of query: 28
Effective length of database: 10,037,345
Effective search space: 281045660
Effective search space used: 281045660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)