BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0156700 Os05g0156700|J090081N15
(157 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0156700 Pyridine nucleotide-disulphide oxidoreductase,... 326 4e-90
Os01g0337900 Similar to Dihydrolipoamide dehydrogenase 217 3e-57
Os01g0328700 Dihydrolipoamide dehydrogenase family protein 65 2e-11
>Os05g0156700 Pyridine nucleotide-disulphide oxidoreductase, class I family
protein
Length = 157
Score = 326 bits (836), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MRVMDADGNVVPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTH 60
MRVMDADGNVVPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTH
Sbjct: 1 MRVMDADGNVVPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTH 60
Query: 61 PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKVYMFLVCATYFY 120
PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKVYMFLVCATYFY
Sbjct: 61 PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKVYMFLVCATYFY 120
Query: 121 QFFFLAGLFLSVVLSCLQIGTWVLLSCMASFSDILWA 157
QFFFLAGLFLSVVLSCLQIGTWVLLSCMASFSDILWA
Sbjct: 121 QFFFLAGLFLSVVLSCLQIGTWVLLSCMASFSDILWA 157
>Os01g0337900 Similar to Dihydrolipoamide dehydrogenase
Length = 561
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/109 (94%), Positives = 108/109 (99%)
Query: 1 MRVMDADGNVVPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTH 60
M+VMDADGN VPNLYCIGDANGKLMLAHAASAQGISVVE+ISG+D+ILNHLSIPAACFTH
Sbjct: 377 MQVMDADGNAVPNLYCIGDANGKLMLAHAASAQGISVVERISGKDNILNHLSIPAACFTH 436
Query: 61 PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKV 109
PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAK+
Sbjct: 437 PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKM 485
>Os01g0328700 Dihydrolipoamide dehydrogenase family protein
Length = 503
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 11 VPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTHPEISMVGLTE 70
V +Y IGDA MLAH A G++ VE I+G++ +++ ++P +THPE++ VG TE
Sbjct: 342 VNGVYAIGDAIPGPMLAHKAEEDGVACVEFIAGKEGHVDYDTVPGVVYTHPEVASVGKTE 401
Query: 71 PQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKV 109
Q + G V K AN++A A ++ +GL KV
Sbjct: 402 EQVKAL----GIPYRVGKFPLLANSRAKAIDDAEGLVKV 436
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,164,834
Number of extensions: 185130
Number of successful extensions: 510
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)