Os05g0156700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyridine nucleotide-disulphide oxidoreductase, class I family protein.
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Os05g0156700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyridine nucleotide-disulphide oxidoreductase, class I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.23 | 0.566 | 8.49 | 0.562 | 1.58 | 1.25 | 0.241 | -2.52 | 0.0761 | 21.2 | 20.3 | 834 | 2.42 | 3.18 |
| 158.93 | 0.587 | 8.45 | 1.13 | 1.52 | 1.4 | 1.01 | -- | 0.127 | 21.6 | 20.6 | 939 | 0.383 | 6.5 |
| 145.31 | 0.561 | 8.49 | 0.539 | 1.56 | 1.25 | -- | -2.57 | 0.0727 | 21.2 | 20.3 | 840 | 2.39 | 3.17 |
| 162.07 | 0.593 | 8.44 | 1.12 | 1.51 | 1.45 | -- | -- | 0.162 | 22.1 | 20.45 | 921 | 0.733 | 6.93 |
| 195.86 | 0.652 | 8.48 | 0.295 | -- | 1.01 | -- | -2.24 | -0.00576 | -- | 19.21 | 2557 | 2.45 | 3.5 |
| 230.85 | 0.712 | 8.33 | 1.56 | 0.686 | -- | 1.72 | -- | 0.54 | 19.3 | -- | -- | -- | -- |
| 238.07 | 0.723 | 8.33 | 1.51 | 0.691 | -- | -- | -- | 0.541 | 19.9 | -- | -- | -- | -- |
| 209.45 | 0.674 | 8.39 | 0.96 | -- | 1.08 | -- | -- | 0.181 | -- | 19.26 | 2695 | 2.82 | 3.25 |
| 190.99 | 0.644 | 8.47 | -- | 1.46 | 1.55 | -- | -- | 0.0349 | 22.6 | 20.5 | 938 | 0.883 | 7.07 |
| 264.06 | 0.759 | 8.31 | 1.51 | -- | -- | -- | -- | 0.532 | -- | -- | -- | -- | -- |
| 298.54 | 0.808 | 8.37 | -- | 0.681 | -- | -- | -- | 0.372 | 20.1 | -- | -- | -- | -- |
| 226 | 0.7 | 8.44 | -- | -- | 1.5 | -- | -- | -0.0137 | -- | 19.98 | 2643 | 1.22 | 7.47 |
| 323.99 | 0.84 | 8.35 | -- | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.74 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 2 | 160.45 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 3 | 160.86 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 9 | 161.99 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 16 | 162.90 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 13 |
| 21 | 163.18 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 35 | 164.10 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 52 | 165.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 54 | 165.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 71 | 166.32 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 17 |
| 75 | 166.53 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 85 | 166.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 87 | 166.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 88 | 166.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 99 | 167.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 112 | 167.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 167 | 168.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 194 | 168.47 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 202 | 168.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 357 | 170.27 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 366 | 170.41 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 20 |
| 461 | 171.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 523 | 171.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 552 | 171.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 671 | 172.54 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 709 | 172.73 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 710 | 172.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 718 | 172.76 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 734 | 172.85 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 786 | 173.07 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 21 |
| 797 | 173.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 816 | 173.21 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 885 | 173.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 934 | 173.71 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 978 | 173.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 982 | 173.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 997 | 173.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |