BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0156700 Os05g0156700|J090081N15
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16950.2  | chr3:5786508-5790383 REVERSE LENGTH=624            207   2e-54
AT4G16155.1  | chr4:9153570-9157322 REVERSE LENGTH=631            206   5e-54
AT1G48030.1  | chr1:17717432-17719141 REVERSE LENGTH=508           72   1e-13
AT3G17240.1  | chr3:5890278-5892166 REVERSE LENGTH=508             65   1e-11

>AT3G16950.2 | chr3:5786508-5790383 REVERSE LENGTH=624
          Length = 623

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 94/109 (86%), Positives = 105/109 (96%)

Query: 1   MRVMDADGNVVPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTH 60
           MRV+D  G +VPNLYCIGDANGKLMLAHAASAQGISVVEQ+SGRDH+LNHLSIPAACFTH
Sbjct: 385 MRVIDGKGTLVPNLYCIGDANGKLMLAHAASAQGISVVEQVSGRDHVLNHLSIPAACFTH 444

Query: 61  PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKV 109
           PEISMVGLTEPQA+EK +KEGF++SVVKTSFKANTKALAENEG+G+AK+
Sbjct: 445 PEISMVGLTEPQAKEKGEKEGFKVSVVKTSFKANTKALAENEGEGIAKM 493



>AT4G16155.1 | chr4:9153570-9157322 REVERSE LENGTH=631
          Length = 630

 Score =  206 bits (524), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 93/109 (85%), Positives = 106/109 (97%)

Query: 1   MRVMDADGNVVPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTH 60
           MRV+D +G +VP+LYCIGDANGKLMLAHAASAQGISVVEQ++GRDH+LNHLSIPAACFTH
Sbjct: 445 MRVIDGNGKLVPHLYCIGDANGKLMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTH 504

Query: 61  PEISMVGLTEPQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKV 109
           PEISMVGLTEPQAREKA+KEGF++S+ KTSFKANTKALAENEG+GLAK+
Sbjct: 505 PEISMVGLTEPQAREKAEKEGFKVSIAKTSFKANTKALAENEGEGLAKM 553



>AT1G48030.1 | chr1:17717432-17719141 REVERSE LENGTH=508
          Length = 507

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 11  VPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTHPEISMVGLTE 70
           VP +Y IGD     MLAH A   G++ VE I+G+   +++  +P   +THPE++ VG TE
Sbjct: 346 VPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTE 405

Query: 71  PQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKV 109
            Q +    KEG    V K  F AN++A A +  +GL K+
Sbjct: 406 EQLK----KEGVSYRVGKFPFMANSRAKAIDNAEGLVKI 440



>AT3G17240.1 | chr3:5890278-5892166 REVERSE LENGTH=508
          Length = 507

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 11  VPNLYCIGDANGKLMLAHAASAQGISVVEQISGRDHILNHLSIPAACFTHPEISMVGLTE 70
           V  +Y IGD     MLAH A   G++ VE I+G+   +++  +P   +T+PE++ VG TE
Sbjct: 346 VSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTE 405

Query: 71  PQAREKADKEGFEISVVKTSFKANTKALAENEGDGLAKV 109
            Q +    KEG   +V K  F AN++A A +  +G+ K+
Sbjct: 406 EQLK----KEGVSYNVGKFPFMANSRAKAIDTAEGMVKI 440



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,366,521
Number of extensions: 124186
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 4
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)