BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0156000 Os05g0156000|Os05g0156000
(143 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0156000 Conserved hypothetical protein 200 3e-52
Os12g0413301 UDP-glucose/GDP-mannose dehydrogenase family p... 197 2e-51
Os06g0517800 195 7e-51
Os01g0213700 Conserved hypothetical protein 195 1e-50
Os07g0534800 Conserved hypothetical protein 192 9e-50
Os04g0200566 UDP-glucose/GDP-mannose dehydrogenase family p... 191 2e-49
Os06g0351800 Conserved hypothetical protein 170 4e-43
Os07g0263100 169 4e-43
Os09g0264900 166 4e-42
Os07g0268900 166 4e-42
Os04g0260200 73 8e-14
>Os05g0156000 Conserved hypothetical protein
Length = 143
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/143 (72%), Positives = 104/143 (72%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMH
Sbjct: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDX 120
STLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDV 120
Query: 121 XXXXXXXXXXXTMTWRRSRCCRR 143
TMTWRRSRCCRR
Sbjct: 121 AAAVHRARSRATMTWRRSRCCRR 143
>Os12g0413301 UDP-glucose/GDP-mannose dehydrogenase family protein
Length = 143
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/143 (72%), Positives = 103/143 (72%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMTVARVTARRRQEP GERRWLNQLQELSCMCVHEVREAPEMLLMH
Sbjct: 1 MAGVARFMTVARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPEMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDX 120
STLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDV 120
Query: 121 XXXXXXXXXXXTMTWRRSRCCRR 143
TMTWRRSRCCRR
Sbjct: 121 AAAVHRARSRATMTWRRSRCCRR 143
>Os06g0517800
Length = 143
Score = 195 bits (496), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 103/143 (72%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMTVARVTARRRQEP GERRWLNQLQELSCMCVHEVREAPEM+LMH
Sbjct: 1 MAGVARFMTVARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPEMVLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDX 120
STLVAPSFEI+EGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDRRWRRRWTISTLVAPSFEIIEGKWRGGRGEDAGATAWPGLVQISGNGDDV 120
Query: 121 XXXXXXXXXXXTMTWRRSRCCRR 143
TMTWRRSRCCRR
Sbjct: 121 AAAVHRARSRATMTWRRSRCCRR 143
>Os01g0213700 Conserved hypothetical protein
Length = 187
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 102/143 (71%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMTVARVTARRRQEP GERRWLNQLQELSCMCVHEVREAPEMLLMH
Sbjct: 45 MAGVARFMTVARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPEMLLMHGIGLVLTG 104
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDX 120
STLVAPSFEILEGKWRGGRGE+AGATAWPGLVQISGNGDD
Sbjct: 105 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWRGGRGEEAGATAWPGLVQISGNGDDV 164
Query: 121 XXXXXXXXXXXTMTWRRSRCCRR 143
TMTWR SRCCRR
Sbjct: 165 AAAVHRARSRATMTWRCSRCCRR 187
>Os07g0534800 Conserved hypothetical protein
Length = 143
Score = 192 bits (487), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 101/143 (70%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMTVARVTARRRQEP GERRWLNQLQELSCMCVHEVREAP MLLMH
Sbjct: 1 MAGVARFMTVARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPGMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDX 120
STLVAPSFEILEGKW GGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWIGGRGEDAGATAWPGLVQISGNGDDV 120
Query: 121 XXXXXXXXXXXTMTWRRSRCCRR 143
TMTWRRSRCCRR
Sbjct: 121 AAAVHRARSRATMTWRRSRCCRR 143
>Os04g0200566 UDP-glucose/GDP-mannose dehydrogenase family protein
Length = 143
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 101/143 (70%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMT ARVTARRRQEP ERRWLNQLQELSCMCVHEVREAPEMLLMH
Sbjct: 1 MAGVARFMTAARVTARRRQEPPNERRWLNQLQELSCMCVHEVREAPEMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDX 120
STLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDQRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDV 120
Query: 121 XXXXXXXXXXXTMTWRRSRCCRR 143
TMTWRRSRCCRR
Sbjct: 121 TAAVHRARSRATMTWRRSRCCRR 143
>Os06g0351800 Conserved hypothetical protein
Length = 207
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 88/119 (73%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVAR MT ARVTARRRQEP GERRWLNQLQELSCMCVHEVREAP MLLMH
Sbjct: 1 MAGVARLMTAARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPGMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 119
STLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 119
>Os07g0263100
Length = 207
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 88/119 (73%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVARFMTVARVTARRRQEP GERRWLNQLQELSCMCVHEVREAP MLLMH
Sbjct: 1 MAGVARFMTVARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPGMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 119
STLVAPSFEILEGKWRGGRGEDAG TAWP LVQISGNGDD
Sbjct: 61 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGVTAWPDLVQISGNGDD 119
>Os09g0264900
Length = 207
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 88/119 (73%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVAR MT ARVTARRRQEP GERRWLNQLQELSCMCVHEVREAP MLLMH
Sbjct: 1 MAGVARLMTAARVTARRRQEPPGERRWLNQLQELSCMCVHEVREAPGMLLMHGIGLVLTG 60
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 119
STLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 61 GGGFGNGDGDLRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 119
>Os07g0268900
Length = 257
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 87/119 (73%)
Query: 1 MAGVARFMTVARVTARRRQEPLGERRWLNQLQELSCMCVHEVREAPEMLLMHXXXXXXXX 60
MAGVAR MT ARVTARRRQEP GERRWLNQLQELSCMCVHEV EAP MLLMH
Sbjct: 60 MAGVARLMTTARVTARRRQEPPGERRWLNQLQELSCMCVHEVSEAPGMLLMHGIGLVLTG 119
Query: 61 XXXXXXXXXXXXXXXXXXXSTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 119
STLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD
Sbjct: 120 GGGFGNGDGDRRWRRRWTISTLVAPSFEILEGKWRGGRGEDAGATAWPGLVQISGNGDD 178
>Os04g0260200
Length = 78
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 37/49 (75%)
Query: 86 SFEILEGKWRGGRGEDAGATAWPGLVQISGNGDDXXXXXXXXXXXXTMT 134
SFEIL+GKWRGGRGE+AGATAWPGLVQISGNGD+ TMT
Sbjct: 30 SFEILDGKWRGGRGENAGATAWPGLVQISGNGDEVAAAVHRARSRATMT 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,993,672
Number of extensions: 117468
Number of successful extensions: 501
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 11
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)