Os06g0351800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0351800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.29 | 0.655 | 5.02 | -1.04 | 0.381 | -1.27 | -0.247 | -2.61 | -0.117 | 7.77 | 10.01 | 4 | -- | -- |
| 199.63 | 0.658 | 4.97 | -0.646 | 0.371 | -1.45 | -0.666 | -- | -0.00541 | 8.83 | 6.753 | 7 | -- | -- |
| 194.45 | 0.649 | 5.02 | -1.06 | 0.383 | -1.25 | -- | -2.67 | -0.123 | 7.58 | 8.812 | 4 | -- | -- |
| 200.43 | 0.659 | 4.98 | -0.699 | 0.394 | -1.29 | -- | -- | -0.0227 | 7.49 | 10.09 | 7 | -- | -- |
| 202.26 | 0.662 | 5.03 | -1.06 | -- | -1.29 | -- | -2.77 | -0.115 | -- | 8.559 | 5 | -- | -- |
| 213.58 | 0.685 | 5.02 | -0.942 | 0.572 | -- | 1.1 | -- | -0.199 | 4.39 | -- | -- | -- | -- |
| 216.31 | 0.689 | 5.02 | -0.95 | 0.594 | -- | -- | -- | -0.204 | 5.01 | -- | -- | -- | -- |
| 204.43 | 0.666 | 4.98 | -0.645 | -- | -1.43 | -- | -- | 0.00221 | -- | 9.529 | 232 | -- | -- |
| 211.93 | 0.678 | 4.95 | -- | 0.373 | -1.64 | -- | -- | 0.0975 | 8.57 | 7.712 | 14 | -- | -- |
| 234.87 | 0.716 | 5.03 | -0.928 | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
| 240.07 | 0.725 | 5 | -- | 0.578 | -- | -- | -- | -0.0985 | 5.06 | -- | -- | -- | -- |
| 214.43 | 0.682 | 4.96 | -- | -- | -1.65 | -- | -- | 0.0968 | -- | -7.376 | 232 | -- | -- |
| 257.59 | 0.749 | 5 | -- | -- | -- | -- | -- | -0.0861 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.07 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 18 | 186.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 45 | 189.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 17 |
| 57 | 189.67 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 17 |
| 70 | 190.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 74 | 190.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 112 | 191.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 122 | 191.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 125 | 191.35 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 22 |
| 168 | 191.99 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 17 |
| 172 | 192.06 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 9 |
| 195 | 192.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 216 | 192.78 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 221 | 192.81 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 19 |
| 233 | 193.02 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 14 |
| 265 | 193.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 268 | 193.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 273 | 193.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 275 | 193.44 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 304 | 193.76 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 330 | 193.92 | temperature | 15 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 333 | 193.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 339 | 194.02 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 4 |
| 344 | 194.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 345 | 194.08 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 346 | 194.08 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 349 | 194.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 355 | 194.13 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 359 | 194.15 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 395 | 194.33 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 424 | 194.52 | humidity | 70 | 90 | > th | dose independent | rect. | 16 | 14 |
| 427 | 194.54 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 11 |
| 428 | 194.54 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 443 | 194.62 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 6 |
| 495 | 194.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 526 | 194.99 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 534 | 195.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 564 | 195.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 573 | 195.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 595 | 195.32 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 604 | 195.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 618 | 195.39 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 658 | 195.54 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 18 |
| 662 | 195.55 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 670 | 195.58 | temperature | 20 | 720 | < th | dose independent | sin | 13 | NA |
| 707 | 195.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 723 | 195.77 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 739 | 195.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 747 | 195.86 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 755 | 195.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 774 | 195.96 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 806 | 196.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 822 | 196.13 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 14 |
| 825 | 196.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 828 | 196.14 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 834 | 196.16 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 6 | 10 |
| 845 | 196.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 851 | 196.21 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 856 | 196.23 | humidity | 50 | 30 | > th | dose independent | rect. | 6 | 10 |
| 860 | 196.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 868 | 196.26 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 899 | 196.35 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 904 | 196.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 938 | 196.46 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 946 | 196.48 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 955 | 196.49 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 970 | 196.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |