Os05g0156000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0156000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 375.97 | 0.911 | 3.88 | -1.69 | 0.0334 | -1.14 | -0.712 | -0.565 | 0.624 | 14.8 | 25.5 | 4229 | -- | -- |
| 376.21 | 0.903 | 3.86 | -1.53 | 0.0522 | -1.19 | -0.713 | -- | 0.665 | 14.9 | 25.52 | 4230 | -- | -- |
| 377.71 | 0.905 | 3.88 | -1.66 | 0.0459 | -1.15 | -- | -0.42 | 0.631 | 15.1 | 25.52 | 4230 | -- | -- |
| 377.8 | 0.905 | 3.86 | -1.54 | 0.0345 | -1.18 | -- | -- | 0.66 | 15.3 | 25.6 | 4230 | -- | -- |
| 377.77 | 0.905 | 3.88 | -1.66 | -- | -1.15 | -- | -0.402 | 0.632 | -- | 25.53 | 4230 | -- | -- |
| 411.54 | 0.951 | 3.91 | -1.97 | 0.13 | -- | -0.69 | -- | 0.456 | 14.9 | -- | -- | -- | -- |
| 413.15 | 0.952 | 3.91 | -1.98 | 0.129 | -- | -- | -- | 0.452 | 15.2 | -- | -- | -- | -- |
| 377.87 | 0.905 | 3.86 | -1.55 | -- | -1.18 | -- | -- | 0.662 | -- | 25.6 | 4230 | -- | -- |
| 437.14 | 0.974 | 3.82 | -- | 0.0629 | -1.37 | -- | -- | 0.878 | 14.9 | 25.3 | 5501 | -- | -- |
| 414.1 | 0.951 | 3.91 | -1.99 | -- | -- | -- | -- | 0.448 | -- | -- | -- | -- | -- |
| 516.76 | 1.06 | 3.86 | -- | 0.168 | -- | -- | -- | 0.672 | 15.2 | -- | -- | -- | -- |
| 395.47 | 0.926 | 3.75 | -- | -- | -1.76 | -- | -- | 1.18 | -- | 21.2 | 18172 | -- | -- |
| 518.37 | 1.06 | 3.86 | -- | -- | -- | -- | -- | 0.669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 370.77 | wind | 1 | 30 | < th | dose dependent | rect. | 22 | 4 |
| 2 | 371.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 5 | 371.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 6 | 371.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 17 | 371.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 66 | 372.96 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 69 | 373.02 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 125 | 374.01 | wind | 1 | 270 | < th | dose independent | rect. | 20 | 4 |
| 128 | 374.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 148 | 374.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 153 | 374.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 159 | 374.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 160 | 374.69 | wind | 1 | 270 | < th | dose dependent | rect. | 19 | 5 |
| 161 | 374.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 202 | 375.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 229 | 375.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 251 | 375.81 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 252 | 375.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 274 | 375.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 275 | 375.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 318 | 376.34 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 13 |
| 346 | 376.51 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 18 |
| 371 | 376.66 | wind | 1 | 270 | < th | dose independent | rect. | 21 | 2 |
| 425 | 377.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 497 | 377.40 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 588 | 377.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 595 | 377.76 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 598 | 377.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 603 | 377.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 622 | 377.81 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 15 |
| 648 | 377.85 | wind | 1 | 30 | < th | dose independent | rect. | 22 | 4 |
| 665 | 377.87 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 712 | 377.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 720 | 377.96 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 776 | 378.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 778 | 378.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 848 | 378.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 10 |
| 887 | 378.29 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 913 | 378.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 937 | 378.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 939 | 378.43 | wind | 1 | 270 | < th | dose independent | rect. | 14 | 10 |
| 941 | 378.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 966 | 378.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 23 |