Os01g0213700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0213700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.56 | 0.435 | 2.96 | 0.787 | 0.0708 | -0.374 | -0.232 | 6.37 | 0.034 | 11.3 | 32.1 | 4270 | -- | -- |
| 87.42 | 0.435 | 3.07 | -0.06 | 0.0641 | 0.348 | -0.329 | -- | 0.0445 | 10.9 | 29.9 | 4254 | -- | -- |
| 85.76 | 0.431 | 2.97 | 0.767 | 0.0726 | -0.359 | -- | 6.29 | 0.0349 | 12.1 | 32.03 | 4313 | -- | -- |
| 87.41 | 0.435 | 3.07 | -0.14 | 0.0638 | 0.401 | -- | -- | 0.0265 | 11.7 | 29.88 | 4260 | -- | -- |
| 86.1 | 0.432 | 2.97 | 0.783 | -- | -0.382 | -- | 6.39 | 0.0317 | -- | 32 | 4311 | -- | -- |
| 92.64 | 0.451 | 3.08 | -0.0212 | 0.05 | -- | -0.28 | -- | -0.0237 | 10.7 | -- | -- | -- | -- |
| 92.97 | 0.452 | 3.09 | -0.0326 | 0.0514 | -- | -- | -- | -0.0246 | 10.7 | -- | -- | -- | -- |
| 87.77 | 0.436 | 3.08 | -0.138 | -- | 0.395 | -- | -- | 0.0239 | -- | 29.88 | 4264 | -- | -- |
| 87.89 | 0.437 | 3.07 | -- | 0.0757 | 0.378 | -- | -- | 0.0374 | 11.8 | 29.89 | 4264 | -- | -- |
| 93.13 | 0.451 | 3.09 | -0.0336 | -- | -- | -- | -- | -0.0249 | -- | -- | -- | -- | -- |
| 93 | 0.451 | 3.08 | -- | 0.0517 | -- | -- | -- | -0.021 | 10.7 | -- | -- | -- | -- |
| 88.25 | 0.438 | 3.07 | -- | -- | 0.368 | -- | -- | 0.0353 | -- | 29.82 | 4264 | -- | -- |
| 93.16 | 0.451 | 3.09 | -- | -- | -- | -- | -- | -0.0212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 2 | 84.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 3 | 84.96 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 4 | 84.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 19 | 85.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 22 | 85.01 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 46 | 85.15 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 52 | 85.22 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 66 | 85.34 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 69 | 85.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 87 | 85.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 89 | 85.41 | temperature | 30 | 4320 | > th | dose dependent | sin | 9 | NA |
| 107 | 85.50 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 9 | NA |
| 118 | 85.56 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 213 | 85.71 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 240 | 85.73 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 256 | 85.77 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 20 | 18 |
| 271 | 85.83 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 296 | 85.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 297 | 85.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 337 | 85.90 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 404 | 86.02 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 429 | 86.10 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 436 | 86.12 | temperature | 30 | 4320 | > th | dose independent | sin | 10 | NA |
| 534 | 86.23 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 571 | 86.30 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 575 | 86.30 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 10 |
| 698 | 86.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 745 | 86.34 | temperature | 30 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 908 | 86.51 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 960 | 86.58 | wind | 1 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 979 | 86.59 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 17 | 2 |