BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0155400 Os05g0155400|J065054C19
         (193 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0155400  Zinc finger, GATA-type domain containing protein    207   4e-54
Os01g0343300  Zinc finger, GATA-type domain containing protein    102   1e-22
Os03g0831200  Similar to GATA transcription factor 19              77   7e-15
Os01g0976800  Zinc finger, GATA-type domain containing protein     75   3e-14

>Os05g0155400 Zinc finger, GATA-type domain containing protein
          Length = 193

 Score =  207 bits (527), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 113/193 (58%)

Query: 1   NYXXXXXXXXXXXAPRNAAKLRFACLHATICARHSDRSIDRSMGSSDQKVIGIXXXXXXX 60
           NY           APRNAAKLRFACLHATICARHSDRSIDRSMGSSDQKVIGI       
Sbjct: 1   NYSLLFSPLLLPFAPRNAAKLRFACLHATICARHSDRSIDRSMGSSDQKVIGIAAAAAAA 60

Query: 61  XXXXGRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLDKKXXXXXXXXX 120
               GRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLDKK         
Sbjct: 61  AEEAGRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLDKKQQQEHHPHH 120

Query: 121 XXXXXXXXXXXXXXXXXEDHXXXXXXXXXXXXXXXXXXXXLQVVKKRRVLMGVEEXXXXX 180
                            EDH                    LQVVKKRRVLMGVEE     
Sbjct: 121 HQQQQQQYQRQQQQQQQEDHSDAASSVKDSSSSSSNKSSSLQVVKKRRVLMGVEEAAILL 180

Query: 181 XXXXXXXPTLLHG 193
                  PTLLHG
Sbjct: 181 MALSSSSPTLLHG 193



>Os01g0343300 Zinc finger, GATA-type domain containing protein
          Length = 131

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 73/152 (48%), Gaps = 22/152 (14%)

Query: 43  MGSSDQKVIGIXXXXXXXXXXXGRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
           MGS+D+KV+GI           GRR CVEC ATTTPMWR GPTGPRSLCNACGIRYRKKR
Sbjct: 1   MGSTDRKVVGIGVAEE------GRRSCVECRATTTPMWRSGPTGPRSLCNACGIRYRKKR 54

Query: 103 RQELGLDKKXXXXXXXXXXXXXXXXXXXXXXXXXXEDHXXXXXXXXXXXXXXXXXXXXLQ 162
           RQ+LGLD                             +                     LQ
Sbjct: 55  RQDLGLD---------------LNQPQKQEHGEVIPEVKDSNSNSNNCNSGSGNSSSNLQ 99

Query: 163 VVKKRRVLMGVEEXXXXXXXXXX-XXPTLLHG 193
           VV KRR+LMGVEE              TLLHG
Sbjct: 100 VVPKRRLLMGVEEAALLLMTLSSPSASTLLHG 131



>Os03g0831200 Similar to GATA transcription factor 19
          Length = 136

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 67  RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLD 109
           + C +C  T TP+WRGGP+GP+SLCNACGIRYRKKRR+ LGLD
Sbjct: 25  KACTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRREALGLD 67



>Os01g0976800 Zinc finger, GATA-type domain containing protein
          Length = 142

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 65  GRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLD 109
           G + C +C  T TP+WRGGP GP+SLCNACGIRYRK+RR  LGLD
Sbjct: 20  GSKACADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRRAALGLD 64



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,902,642
Number of extensions: 111175
Number of successful extensions: 253
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 6
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)